Evidence map›Paper›PMID 29436561›Full record

ArticleSaudi medical journal2018

Legionella confirmation in cooling tower water. Comparison of culture, real-time PCR and next generation sequencing.

Maha Farhat, Raja A Shaheed, Haider H Al-Ali, Abdullah S Al-Ghamdi, Ghadeer M Al-Hamaqi, Hawraa S Maan, Zainab A Al-Mahfoodh, Hussain Z Al-Seba

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Saudi medical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Maha FarhatDepartment of Biochemistry, Imam Abdulrahman Bin Faisal University, Dammam, Kindgdom of Saudi Arabia. E-mail. mFarhat@uod.edu.sa.
Raja A Shaheed
Haider H Al-Ali
Abdullah S Al-Ghamdi
Ghadeer M Al-Hamaqi
Hawraa S Maan
Zainab A Al-Mahfoodh
Hussain Z Al-Seba
Imam Abdulrahman Bin Faisal University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesTo investigate the presence of Legionella spp in cooling tower water. Legionella proliferation in cooling tower water has serious public health implications as it can be transmitted to humans via aerosols and cause Legionnaires' disease.

methodsSamples of cooling tower water were collected from King Fahd Hospital of the University (KFHU) (Imam Abdulrahman Bin Faisal University, 2015/2016). The water samples were analyzed by a standard Legionella culture method, real-time polymerase chain reaction (RT-PCR), and 16S rRNA next-generation sequencing. In addition, the bacterial community composition was evaluated.

resultsAll samples were negative by conventional Legionella culture. In contrast, all water samples yielded positive results by real-time PCR (105 to 106 GU/L). The results of 16S rRNA next generation sequencing showed high similarity and reproducibility among the water samples. The majority of sequences were Alpha-, Beta-, and Gamma-proteobacteria, and Legionella was the predominant genus. The hydrogen-oxidizing gram-negative bacterium Hydrogenophaga was present at high abundance, indicating high metabolic activity. Sphingopyxis, which is known for its resistance to antimicrobials and as a pioneer in biofilm formation, was also detected.

conclusionOur findings indicate that monitoring of Legionella in cooling tower water would be enhanced by use of both conventional culturing and molecular methods.

Indexed as

Bacterial LoadHigh-Throughput Nucleotide SequencingReal-Time Polymerase Chain ReactionComamonadaceaeDNA, BacterialLegionellaRNA, Ribosomal, 16SSphingomonadaceaeWater MicrobiologyDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID29436561
PMCPMC5885089
OpenAlexW2788558840

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.