Evidence map›Paper›PMID 29436111›Full record

ArticleAmerican journal of medical genetics. Part A2018

A biallelic ANTXR1 variant expands the anthrax toxin receptor associated phenotype to tooth agenesis.

Nuriye Dinckan, Renqian Du, Zeynep C Akdemir, Yavuz Bayram, Shalini N Jhangiani, Harsha Doddapaneni, Jianhong Hu, Donna M Muzny, Yeliz Guven, Oya Aktoren and 7 more

Abstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Genetic/Protein Association of Atopic Dermatitis and Tooth Agenesis.International journal of molecular sciences · 2023
    Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Nuriye DinckanDepartment of Medical Genetics, Istanbul Medical Faculty, Istanbul University, Istanbul, Turkey.
Renqian DuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Zeynep C AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Yavuz BayramDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Shalini N JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Harsha DoddapaneniHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Jianhong HuHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Yeliz GuvenDepartment of Pedodontics, Faculty of Dentistry, Istanbul University, Capa, Istanbul, Turkey.
Oya AktorenDepartment of Pedodontics, Faculty of Dentistry, Istanbul University, Capa, Istanbul, Turkey.
Hulya KayseriliDepartment of Medical Genetics, School of Medicine, Koc University, Istanbul, Turkey.
Eric BoerwinkleHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.ORCID 0000-0002-1356-5698
Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas.
Zehra O UygunerDepartment of Medical Genetics, Istanbul Medical Faculty, Istanbul University, Istanbul, Turkey.
Ariadne LetraCenter for Craniofacial Research, University of Texas Health Science Center at Houston School of Dentistry, Houston, Texas.ORCID 0000-0002-7197-6735
Baylor College of Medicine · USIstanbul University · TRKoç University · TRThe University of Texas Health Science Center · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
Tooth agenesis as a clinical marker for colon cancerR03DE024596 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LETRA, ARIADNE M · 2014 to 2015
$228k
NHGRI NIH HHS K08 HG008986NHGRI NIH HHS UM1 HG006542NIDCR NIH HHS R03 DE024596
6 · The paper itself

Abstract

Tooth development is regulated by multiple genetic pathways, which ultimately drive the complex interactions between the oral epithelium and mesenchyme. Disruptions at any time point during this process may lead to failure of tooth development, also known as tooth agenesis (TA). TA is a common craniofacial abnormality in humans and represents the failure to develop one or more permanent teeth. Many genes and potentially subtle variants in these genes contribute to the TA phenotype. We report the clinical and genetic impact of a rare homozygous ANTXR1 variant (c.1312C>T), identified by whole exome sequencing (WES), in a consanguineous Turkish family with TA. Mutations in ANTXR1 have been associated with GAPO (growth retardation, alopecia, pseudoanodontia, and optic atrophy) syndrome and infantile hemangioma, however no clinical characteristics associated with these conditions were observed in our study family. We detected the expression of Antxr1 in oral and dental tissues of developing mouse embryos, further supporting a role for this gene in tooth development. Our findings implicate ANTXR1 as a candidate gene for isolated TA, suggest the involvement of specific hypomorphic alleles, and expand the previously known ANTXR1-associated phenotypes.

Indexed as

AllelesGenetic Association StudiesMutationPhenotypeAmino Acid SubstitutionAnimalsAnodontiaChildConsanguinityExome SequencingFaciesGenotypeHumansMaleMiceMicrofilament ProteinsANTXR1 protein, humanMicrofilament ProteinsNeoplasm ProteinsReceptors, Cell SurfaceANTXR1expressiontooth agenesiswhole exome sequencing

Identifiers

PMID29436111
PMCPMC5933053
OpenAlexW2791283040

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.