Evidence map›Paper›PMID 29435954›Full record

ArticleNeuroinformatics2018

Large-scale Exploration of Neuronal Morphologies Using Deep Learning and Augmented Reality.

Zhongyu Li, Erik Butler, Kang Li, Aidong Lu, Shuiwang Ji, Shaoting Zhang

Abstract read
PubMed Publisher
In one paragraph

Article in Neuroinformatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Augmented reality during parotid surgery: real-life evaluation of voice control of a head mounted display.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2023
    Article
  6. NeuRegenerate: A Framework for Visualizing Neurodegeneration.IEEE transactions on visualization and computer graphics · 2023
    Article
  7. Highlights from the Era of Open Source Web-Based Tools.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhongyu LiDepartment of Computer Science, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA.
Erik ButlerDepartment of Computer Science, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA.
Kang LiDepartment of Industrial and Systems Engineering, The State University of New Jersey, Piscataway, NJ, 08854, USA.
Aidong LuDepartment of Computer Science, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA.
Shuiwang JiSchool of Electrical Engineering and Computer Science, Washington State University, Pullman, WA, 99164, USA.
Shaoting ZhangDepartment of Computer Science, University of North Carolina at Charlotte, Charlotte, NC, 28223, USA. rutgers.shaoting@gmail.com.ORCID 0000-0002-8719-448X

Funding

Division of Biological Infrastructure (US) 1661280Division of Biological Infrastructure (US) 1661289Division of Computer and Network Systems 1629913
6 · The paper itself

Abstract

Recently released large-scale neuron morphological data has greatly facilitated the research in neuroinformatics. However, the sheer volume and complexity of these data pose significant challenges for efficient and accurate neuron exploration. In this paper, we propose an effective retrieval framework to address these problems, based on frontier techniques of deep learning and binary coding. For the first time, we develop a deep learning based feature representation method for the neuron morphological data, where the 3D neurons are first projected into binary images and then learned features using an unsupervised deep neural network, i.e., stacked convolutional autoencoders (SCAEs). The deep features are subsequently fused with the hand-crafted features for more accurate representation. Considering the exhaustive search is usually very time-consuming in large-scale databases, we employ a novel binary coding method to compress feature vectors into short binary codes. Our framework is validated on a public data set including 58,000 neurons, showing promising retrieval precision and efficiency compared with state-of-the-art methods. In addition, we develop a novel neuron visualization program based on the techniques of augmented reality (AR), which can help users take a deep exploration of neuron morphologies in an interactive and immersive manner.

Indexed as

Databases, FactualDeep LearningNeural Networks, ComputerNeuronsHumansImaging, Three-DimensionalRandom AllocationAugmented realityBinary codingDeep learningLarge-scale retrievalNeuron morphology

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.