Evidence map›Paper›PMID 29435416›Full record

ArticleFEBS open bio2018

Characterisation of an aptamer against the Runt domain of AML1 (RUNX1) by NMR and mutational analyses.

Kenta Takada, Ryo Amano, Yusuke Nomura, Yoichiro Tanaka, Shigeru Sugiyama, Takashi Nagata, Masato Katahira, Yoshikazu Nakamura, Tomoko Kozu, Taiichi Sakamoto

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 8 institutions in 1 country.

Kenta TakadaDepartment of Life and Environmental Sciences Faculty of Engineering Chiba Institute of Technology Narashino Japan.
Ryo AmanoDepartment of Life and Environmental Sciences Faculty of Engineering Chiba Institute of Technology Narashino Japan.
Yusuke NomuraDivision of Medical Devices National Institute of Health Sciences Tokyo Japan.
Yoichiro TanakaFacility for RI Research and Education Instrumental Analysis Center Yokohama National University Japan.
Shigeru SugiyamaFaculty of Science and Technology Kochi UniversityJapan.
Takashi NagataInstitute of Advanced Energy Kyoto University Uji Japan.
Masato KatahiraInstitute of Advanced Energy Kyoto University Uji Japan.
Yoshikazu NakamuraRIBOMIC Inc.Tokyo Japan.
Tomoko KozuResearch Institute for Clinical Oncology Saitama Cancer CenterIna Japan.
Taiichi SakamotoDepartment of Life and Environmental Sciences Faculty of Engineering Chiba Institute of Technology Narashino Japan.
Chiba Institute of Technology · JPKochi University of Technology · JPKyoto Bunkyo University · JPKyoto University · JPNational Institute of Health Sciences · JPSaitama Cancer Center · JPTokyo University of Science · JPYokohama National University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since the invention of systematic evolution of ligands by exponential enrichment, many short oligonucleotides (or aptamers) have been reported that can bind to a wide range of target molecules with high affinity and specificity. Previously, we reported an RNA aptamer that shows high affinity to the Runt domain (RD) of the AML1 protein, a transcription factor with roles in haematopoiesis and immune function. From kinetic and thermodynamic studies, it was suggested that the aptamer recognises a large surface area of the RD, using numerous weak interactions. In this study, we identified the secondary structure by nuclear magnetic resonance spectroscopy and performed a mutational study to reveal the residue critical for binding to the RD. It was suggested that the large contact area was formed by a DNA-mimicking motif and a multibranched loop, which confers the high affinity and specificity of binding.

Indexed as

AML1aptamerMutationNMR

Identifiers

PMID29435416
PMCPMC5794459
OpenAlexW2773788029

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.