Evidence map›Paper›PMID 29435356›Full record

ArticlePorcine health management2018

Comparison of serum pools and oral fluid samples for detection of porcine circovirus type 2 by quantitative real-time PCR in finisher pigs.

Gitte Blach Nielsen, Jens Peter Nielsen, John Haugegaard, Sanne Christiansen Leth, Lars E Larsen, Charlotte Sonne Kristensen, Ken Steen Pedersen, Helle Stege, Charlotte K Hjulsager, Hans Houe

Open access · goldAbstract read
In one paragraph

Article in Porcine health management, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 36 citations in OpenAlex.

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  11. Noninvasive strategies for surveillance of swine viral diseases: a review.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Gitte Blach NielsenMSD Animal Health Nordic, Havneholmen 25, 1561 Copenhagen V, Denmark.ORCID 0000-0003-1591-1280
Jens Peter Nielsen2Department of Veterinary and Animal Sciences, University of Copenhagen, Grønnegårdsvej 2+8, 1870 Frederiksberg C, Denmark.
John HaugegaardMSD Animal Health Nordic, Havneholmen 25, 1561 Copenhagen V, Denmark.
Sanne Christiansen LethPorcus Veterinary Pig Practice, Ørbækvej 276, 5220 Odense, SØ Denmark.
Lars E LarsenNational Veterinary Institute, Henrik Dams Allé, Bygning 205B, 2800 Kgs. Lyngby, Denmark.
Charlotte Sonne KristensenSEGES Pig Research Centre, Vinkelvej 11, 8620 Kjellerup, Denmark.
Ken Steen PedersenØ-vet A/S, Køberupvej 33, 4700 Næstved, Denmark.
Helle Stege2Department of Veterinary and Animal Sciences, University of Copenhagen, Grønnegårdsvej 2+8, 1870 Frederiksberg C, Denmark.
Charlotte K HjulsagerNational Veterinary Institute, Henrik Dams Allé, Bygning 205B, 2800 Kgs. Lyngby, Denmark.
Hans Houe2Department of Veterinary and Animal Sciences, University of Copenhagen, Grønnegårdsvej 2+8, 1870 Frederiksberg C, Denmark.
University of Copenhagen · DKTechnical University of Denmark · DKKnowledge Centre for Agriculture · DKOdense Municipality · DKVeolia (Denmark) · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPorcine circovirus type 2 (PCV2) diagnostics in live pigs often involves pooled serum and/or oral fluid samples for group-level determination of viral load by quantitative real-time polymerase chain reaction (qPCR). The purpose of the study was to compare the PCV2 viral load determined by qPCR of paired samples at the pen level of pools of sera (SP) from 4 to 5 pigs and the collective oral fluid (OF) from around 30 pigs corresponding to one rope put in the same pen. Pigs in pens of 2 finishing herds were sampled by cross-sectional (Herd 1) and cross-sectional with follow-up (Herd 2) study designs. In Herd 1, 50 sample pairs consisting of SP from 4 to 5 pigs and OF from around 23 pigs were collected. In Herd 2, 65 sample pairs consisting of 4 (SP) and around 30 (OF) pigs were collected 4 times at 3-week intervals.

resultsA higher proportion of PCV2-positive pens (86% vs. 80% and 100% vs. 91%) and higher viral loads (mean difference: 2.10 and 1.83 log(10) PCV2 copies per ml) were found in OF versus SP in both herds. The OF cut-off value corresponding to a positive SP (>3 log(10) PCV2 copies per ml) was estimated to 6.5 and 7.36 log(10) PCV2 copies per ml for Herds 1 and 2, respectively. Significant correlations between SP and OF results were found in Herd 1 (rho = 0.69) and the first sampling in Herd 2 (rho = 0.39), but not for the subsequent consecutive 3 samplings in Herd 2.

conclusionsThe proportion and viral loads of PCV2 positive pens were higher in collective OF (including up to 30 pigs) compared to SP (including 4-5 pigs) of the same pens. Also, OF seemed to detect the PCV2 infection earlier with OF values just below 6.5 (Herd 1) and 7.36 (Herd 2) log(10) being associated with a negative SP for the same pen. Nevertheless, a statistically significant correlation between SP and OF could not be found for all sampling time points, probably due to a high within-pen variation in individual pig viral load becoming very evident in SP of only four or five pigs. Consequently, the results imply that OF is well suited for detecting presence of PCV2 but less so for determining the specific viral load of pigs in a pen.

Indexed as

DiagnosticsFinishersOral fluidPoolingPorcine circovirus type 2Serum

Identifiers

PMID29435356
PMCPMC5793352
OpenAlexW2783602694

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.