Evidence map›Paper›PMID 29434351›Full record

ArticleNature ecology & evolution2018

Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly.

Wesley C Warren, Raquel García-Pérez, Sen Xu, Kathrin P Lampert, Domitille Chalopin, Matthias Stöck, Laurence Loewe, Yuan Lu, Lukas Kuderna, Patrick Minx and 18 more

Abstract read
In one paragraph

Article in Nature ecology & evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Ancestral gene flow shaped the singular origin of the Amazon molly.bioRxiv : the preprint server for biology · 2026
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors.

Wesley C WarrenMcDonnell Genome Institute, School of Medicine, Washington University, St Louis, MO, USA. wwarren@genome.wustl.edu.
Raquel García-PérezInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.
Sen XuDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Kathrin P LampertDepartment of Animal Ecology, Evolution and Biodiversity, Ruhr-Universität Bochum, Bochum, Germany.
Domitille ChalopinInstitut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, CNRS, Université Lyon, Lyon, France.
Matthias StöckLeibniz-Institute of Freshwater Ecology and Inland Fisheries, Berlin, Germany.ORCID http://orcid.org/0000-0003-4888-8371
Laurence LoeweLaboratory of Genetics and Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, USA.
Yuan LuDepartment of Chemistry and Biochemistry, Texas State University, San Marcos, TX, USA.
Lukas KudernaInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.ORCID http://orcid.org/0000-0002-9992-9295
Patrick MinxMcDonnell Genome Institute, School of Medicine, Washington University, St Louis, MO, USA.
Michael J MontagueDepartment of Neuroscience, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0003-0253-4404
Chad TomlinsonMcDonnell Genome Institute, School of Medicine, Washington University, St Louis, MO, USA.
LaDeana W HillierMcDonnell Genome Institute, School of Medicine, Washington University, St Louis, MO, USA.
Daniel N MurphyEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, UK.
John WangBiodiversity Research Center, Academica Sinica Taipei, Taipei, Taiwan.
Zhongwei WangDepartment of Physiological Chemistry, Biocenter, University of Würzburg, Würzburg, Germany.
Constantino Macias GarciaInstituto de Ecología, Universidad Nacional Autónoma de México, Ciudad Universitaria, Mexico City, Mexico.ORCID http://orcid.org/0000-0003-3242-4214
Gregg C W ThomasDepartment of Biology, Indiana University, Bloomington, IN, USA.
Jean-Nicolas VolffInstitut de Génomique Fonctionnelle de Lyon, Ecole Normale Supérieure de Lyon, CNRS, Université Lyon, Lyon, France.
Fabiana FariasMcDonnell Genome Institute, School of Medicine, Washington University, St Louis, MO, USA.
Bronwen AkenEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, UK.
Ronald B WalterDepartment of Chemistry and Biochemistry, Texas State University, San Marcos, TX, USA.
Kim D PruittNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA.
Tomas Marques-BonetInstitute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.ORCID http://orcid.org/0000-0002-5597-3075
Matthew W HahnDepartment of Biology, Indiana University, Bloomington, IN, USA.
Susanne KneitzDepartment of Physiological Chemistry, Biocenter, University of Würzburg, Würzburg, Germany.
Michael LynchDepartment of Biology, Indiana University, Bloomington, IN, USA.ORCID http://orcid.org/0000-0002-1653-0642
Manfred SchartlDepartment of Physiological Chemistry, Biocenter, University of Würzburg, Würzburg, Germany.ORCID http://orcid.org/0000-0001-9882-5948

Funding

National Biomedical Information ServicesZIHLM200888 · NLM · NATIONAL LIBRARY OF MEDICINE · PI PALTOO, DINA · 2009 to 2025
$5200.7M
Enhanced Development of the Xiphophorus Model System R24-OD-011120R24OD011120 · OD · TEXAS STATE UNIVERSITY · PI WALTER, RONALD B · 2012 to 2019
$5.3M
Whole genome assembly resources for aquatic models of human diseaseR24OD011198 · OD · WASHINGTON UNIVERSITY · PI WARREN, WESLEY CHARLES · 2012 to 2019
$1.4M
Whole genome assembly resources for aquatic models of human diseaseR24RR032658 · NCRR · WASHINGTON UNIVERSITY · PI WARREN, WESLEY CHARLES · 2011 to 2011
$330k
NCRR NIH HHS R24 RR032658NIH HHS R24 OD011120NIH HHS R24 OD011198Wellcome Trust
6 · The paper itself

Abstract

The extreme rarity of asexual vertebrates in nature is generally explained by genomic decay due to absence of meiotic recombination, thus leading to extinction of such lineages. We explore features of a vertebrate asexual genome, the Amazon molly, Poecilia formosa, and find few signs of genetic degeneration but unique genetic variability and ongoing evolution. We uncovered a substantial clonal polymorphism and, as a conserved feature from its interspecific hybrid origin, a 10-fold higher heterozygosity than in the sexual parental species. These characteristics seem to be a principal reason for the unpredicted fitness of this asexual vertebrate. Our data suggest that asexual vertebrate lineages are scarce not because they are at a disadvantage, but because the genomic combinations required to bypass meiosis and to make up a functioning hybrid genome are rarely met in nature.

Indexed as

GenomePolymorphism, GeneticAnimalsBiological EvolutionFemalePoeciliaReproduction, Asexual

Identifiers

PMID29434351
PMCPMC5866774

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.