Evidence map›Paper›PMID 29434345›Full record

ArticleNature structural & molecular biology2018

Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins.

Eviatar Natan, Tamaki Endoh, Liora Haim-Vilmovsky, Tilman Flock, Guilhem Chalancon, Jonathan T S Hopper, Bálint Kintses, Peter Horvath, Lejla Daruka, Gergely Fekete and 10 more

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
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  15. Article
  16. Heterodimer Formation of the Homodimeric ABC Transporter OpuA.International journal of molecular sciences · 2021
    Article
  17. Article
  18. Article
  19. Article
  20. Cotranslational folding allows misfolding-prone proteins to circumvent deep kinetic traps.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Eviatar NatanThe Aleph Lab Ltd, Oxford, UK. eviatarhj@gmail.com.ORCID 0000-0002-0323-0034
Tamaki EndohFrontier Institute for Biomolecular Engineering Research (FIBER), Konan University, Kobe, Japan.
Liora Haim-VilmovskyEMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, UK.
Tilman FlockMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0003-3398-0968
Guilhem ChalanconMRC Laboratory of Molecular Biology, Cambridge, UK.
Jonathan T S HopperOMass Technologies Ltd, Centre for Innovation & Enterprise, Oxford, UK.
Bálint KintsesSynthetic and System Biology Unit, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Peter HorvathSynthetic and System Biology Unit, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Lejla DarukaSynthetic and System Biology Unit, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Gergely FeketeSynthetic and System Biology Unit, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Csaba PálSynthetic and System Biology Unit, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Balázs PappSynthetic and System Biology Unit, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Erika OsziInstitute of Plant Biology, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Zoltán MagyarInstitute of Plant Biology, Biological Research Center of the Hungarian Academia of Sciences, Szeged, Hungary.
Joseph A MarshMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK.ORCID 0000-0003-4132-0628
Adrian H ElcockDepartment of Biochemistry, University of Iowa, Iowa City, IA, USA.
M Madan BabuMRC Laboratory of Molecular Biology, Cambridge, UK.ORCID 0000-0003-0556-6196
Carol V RobinsonDepartment of Chemistry, University of Oxford, Oxford, UK.
Naoki SugimotoFrontier Institute for Biomolecular Engineering Research (FIBER), Konan University, Kobe, Japan.
Sarah A TeichmannWellcome Trust Sanger Institute, Wellcome Genome Campus, Cambridge, UK. st9@sanger.ac.uk.

Funding

Interactions Regulating Translation and Protein Biogenesis in VivoU54GM105816 · NIGMS · UNIVERSITY OF NOTRE DAME · PI BUSKIRK, ALLEN ROWDON, CLARK, PATRICIA LOUISE · 2013 to 2017
$3.7M
Molecular Simulations of Cotranslational FoldingR01GM099865 · NIGMS · UNIVERSITY OF IOWA · PI ELCOCK, ADRIAN HAMILTON · 2012 to 2015
$1.0M
European Research Council 648364Medical Research Council MC_U105185859Medical Research Council MR/M02122X/1Medical Research Council MR/N020413/1NIGMS NIH HHS R01 GM099865NIGMS NIH HHS U54 GM105816Wellcome Trust 084314
6 · The paper itself

Abstract

Cotranslational protein folding can facilitate rapid formation of functional structures. However, it can also cause premature assembly of protein complexes, if two interacting nascent chains are in close proximity. By analyzing known protein structures, we show that homomeric protein contacts are enriched toward the C termini of polypeptide chains across diverse proteomes. We hypothesize that this is the result of evolutionary constraints for folding to occur before assembly. Using high-throughput imaging of protein homomers in Escherichia coli and engineered protein constructs with N- and C-terminal oligomerization domains, we show that, indeed, proteins with C-terminal homomeric interface residues consistently assemble more efficiently than those with N-terminal interface residues. Using in vivo, in vitro and in silico experiments, we identify features that govern successful assembly of homomers, which have implications for protein design and expression optimization.

Indexed as

Protein BiosynthesisProtein MultimerizationEvolution, MolecularModels, MolecularMolecular ChaperonesMultiprotein ComplexesProtein DomainsProtein EngineeringProtein FoldingProtein SubunitsRibosomesRNA, MessengerSolubilityMolecular ChaperonesMultiprotein ComplexesProtein SubunitsRNA, Messenger

Identifiers

PMID29434345
PMCPMC5995306

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.