Evidence map›Paper›PMID 29434246›Full record

ArticleScientific reports2018

High throughput protease profiling comprehensively defines active site specificity for thrombin and ADAMTS13.

Colin A Kretz, Kärt Tomberg, Alexander Van Esbroeck, Andrew Yee, David Ginsburg

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Mechanisms of ADAMTS13 regulation.Journal of thrombosis and haemostasis : JTH · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Making the cut with protease engineering.Cell chemical biology · 2022
    Review
  10. Article
  11. Quantitative profiling of protease specificity.PLoS computational biology · 2021
    Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Colin A KretzDepartment of Medicine, McMaster University and the Thrombosis and Atherosclerosis Research Institute, Hamilton, Ontario, Canada. colin.kretz@taari.ca.
Kärt TombergDepartment of Human Genetics, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-6144-3601
Alexander Van EsbroeckDepartment of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI, USA.
Andrew YeeLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
David GinsburgLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
University of Michigan · USHoward Hughes Medical Institute · USThrombosis and Atherosclerosis Research Institute · CA

Funding

TRANSGENIC MODELS FOR THE STUDY OF FACTOR V FUNCTIONP01HL057346 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KAUFMAN, RANDAL J. · 1997 to 2013
$19.9M
The Molecular Genetics of HemostasisR35HL135793 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GINSBURG, DAVID · 2017 to 2023
$4.1M
Molecular Genetic Study of von Willebrand FactorR01HL039693 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GINSBURG, DAVID · 1989 to 2016
$2.4M
Howard Hughes Medical InstituteNHLBI NIH HHS P01 HL057346NHLBI NIH HHS R01 HL039693NHLBI NIH HHS R35 HL135793
6 · The paper itself

Abstract

We have combined random 6 amino acid substrate phage display with high throughput sequencing to comprehensively define the active site specificity of the serine protease thrombin and the metalloprotease ADAMTS13. The substrate motif for thrombin was determined by >6,700 cleaved peptides, and was highly concordant with previous studies. In contrast, ADAMTS13 cleaved only 96 peptides (out of >10

Indexed as

ADAMTS13 ProteinAmino Acid SequenceBinding SitesCatalytic DomainHigh-Throughput Screening AssaysHumansKineticsModels, MolecularPeptide LibraryProteomicsSubstrate SpecificityThrombinADAMTS13 ProteinADAMTS13 protein, humanPeptide LibraryThrombin

Identifiers

PMID29434246
PMCPMC5809430
OpenAlexW2807031613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.