Evidence map›Paper›PMID 29434220›Full record

ArticleNature communications2018

The plant-specific histone residue Phe41 is important for genome-wide H3.1 distribution.

Li Lu, Xiangsong Chen, Shuiming Qian, Xuehua Zhong

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. The Histone Variant H3.3 Is Required for Plant Growth and Fertility inInternational journal of molecular sciences · 2024
    Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. DNA polymerase epsilon binds histone H3.1-H4 and recruits MORC1 to mediate meiotic heterochromatin condensation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Li LuLaboratory of Genetics, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Xiangsong ChenLaboratory of Genetics, University of Wisconsin-Madison, Madison, WI, 53706, USA.ORCID http://orcid.org/0000-0003-4311-8001
Shuiming QianLaboratory of Genetics, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Xuehua ZhongLaboratory of Genetics, University of Wisconsin-Madison, Madison, WI, 53706, USA. xuehua.zhong@wisc.edu.

Funding

Uncovering the epigenetic codes for genome integrity, developmental and environmental interaction.R35GM124806 · NIGMS · WASHINGTON UNIVERSITY · PI XUEHUA ZHONG · 2017 to 2026
$4.2M
NIGMS NIH HHS R35 GM124806
6 · The paper itself

Abstract

The dynamic incorporation of histone variants influences chromatin structure and many biological processes. In Arabidopsis, the canonical variant H3.1 differs from H3.3 in four residues, one of which (H3.1Phe41) is unique and conserved in plants. However, its evolutionary significance remains unclear. Here, we show that Phe41 first appeared in H3.1 in ferns and became stable during land plant evolution. Unlike H3.1, which is specifically enriched in silent regions, H3.1F41Y variants gain ectopic accumulation at actively transcribed regions. Reciprocal tail and core domain swap experiments between H3.1 and H3.3 show that the H3.1 core, while necessary, is insufficient to restrict H3.1 to silent regions. We conclude that the vascular-plant-specific Phe41 is critical for H3.1 genomic distribution and may act collaboratively with the H3.1 core to regulate deposition patterns. This study reveals that Phe41 may have evolved to provide additional regulation of histone deposition in plants.

Indexed as

Genome, PlantAmino Acid MotifsArabidopsisArabidopsis ProteinsChromatinGene Expression Regulation, PlantHistonesArabidopsis ProteinsChromatinHistones

Identifiers

PMID29434220
PMCPMC5809374

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.