Evidence map›Paper›PMID 29433568›Full record

ArticleGenome biology2018

The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages.

Eugenia D'Atanasio, Beniamino Trombetta, Maria Bonito, Andrea Finocchio, Genny Di Vito, Mara Seghizzi, Rita Romano, Gianluca Russo, Giacomo Maria Paganotti, Elizabeth Watson and 7 more

Abstract read
In one paragraph

Article in Genome biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Eugenia D'AtanasioDipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy.
Beniamino TrombettaDipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy.
Maria BonitoDipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy.
Andrea FinocchioDipartimento di Biologia, Università di Roma "Tor Vergata", Rome, Italy.
Genny Di VitoDipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy.
Mara SeghizziDipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy.
Rita RomanoDipartimento di Sanità Pubblica e Malattie Infettive, Sapienza Università di Roma, Rome, Italy.
Gianluca RussoDipartimento di Sanità Pubblica e Malattie Infettive, Sapienza Università di Roma, Rome, Italy.
Giacomo Maria PaganottiBotswana-University of Pennsylvania Partnership, Gaborone, Botswana.
Elizabeth WatsonThe Swedish Museum of Natural History, Stockholm, Sweden.
Alfredo CoppaDipartimento di Biologia Ambientale, Sapienza Università di Roma, Rome, Italy.
Paolo AnagnostouDipartimento di Biologia Ambientale, Sapienza Università di Roma, Rome, Italy.
Jean-Michel DugoujonCentre National de la Recherche Scientifique (CNRS), Université Toulouse-3-Paul-Sabatier, Toulouse, France.
Pedro MoralDepartment of Animal Biology-Anthropology, Biodiversity Research Institute, University of Barcelona, Barcelona, Spain.
Daniele SellittoIstituto di Biologia e Patologia Molecolari, CNR, Rome, Italy.
Andrea NovellettoDipartimento di Biologia, Università di Roma "Tor Vergata", Rome, Italy.
Fulvio CrucianiDipartimento di Biologia e Biotecnologie "C. Darwin", Sapienza Università di Roma, Rome, Italy. fulvio.cruciani@uniroma1.it.ORCID 0000-0002-6900-024X

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca PRIN-MIUR 2012JA4BTY_003Ministero dell'Istruzione, dell'Università e della Ricerca PRIN-MIUR 2012JA4BTY_004Sapienza Università di Roma C26A153PCNSapienza Università di Roma RM116154C9BE2C3F
6 · The paper itself

Abstract

backgroundLittle is known about the peopling of the Sahara during the Holocene climatic optimum, when the desert was replaced by a fertile environment.

resultsIn order to investigate the role of the last Green Sahara in the peopling of Africa, we deep-sequence the whole non-repetitive portion of the Y chromosome in 104 males selected as representative of haplogroups which are currently found to the north and to the south of the Sahara. We identify 5,966 mutations, from which we extract 142 informative markers then genotyped in about 8,000 subjects from 145 African, Eurasian and African American populations. We find that the coalescence age of the trans-Saharan haplogroups dates back to the last Green Sahara, while most northern African or sub-Saharan clades expanded locally in the subsequent arid phase.

conclusionsOur findings suggest that the Green Sahara promoted human movements and demographic expansions, possibly linked to the adoption of pastoralism. Comparing our results with previously reported genome-wide data, we also find evidence for a sex-biased sub-Saharan contribution to northern Africans, suggesting that historical events such as the trans-Saharan slave trade mainly contributed to the mtDNA and autosomal gene pool, whereas the northern African paternal gene pool was mainly shaped by more ancient events.

Indexed as

High-Throughput Nucleotide SequencingAfrica, NorthernChromosomes, Human, YHumansMalePhylogenyPopulation DynamicsGreen SaharaMSYTarget next generation sequencingTrans-Saharan haplogroups

Identifiers

PMID29433568
PMCPMC5809971

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.