Evidence map›Paper›PMID 29432160›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Role of a selecting ligand in shaping the murine γδ-TCR repertoire.

Shawn P Fahl, Francis Coffey, Lisa Kain, Payam Zarin, Roland L Dunbrack, Luc Teyton, Juan Carlos Zúñiga-Pflücker, Dietmar J Kappes, David L Wiest

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. HEB collaborates with TCR signaling to upregulatebioRxiv : the preprint server for biology · 2025
    Article
  5. Review
  6. Review
  7. Food for thought: Nutrient metabolism controlling early T cell development.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Development of γδ T Cells: Soldiers on the Front Lines of Immune Battles.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Article
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  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Shawn P FahlBlood Cell Development and Function Program, Fox Chase Cancer Center, Philadelphia, PA 19111.
Francis CoffeyBlood Cell Development and Function Program, Fox Chase Cancer Center, Philadelphia, PA 19111.
Lisa KainDepartment of Immunology and Microbiology, Scripps Research Institute, La Jolla, CA 92037.
Payam ZarinBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5 Canada.
Roland L DunbrackMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA 19111.
Luc TeytonDepartment of Immunology and Microbiology, Scripps Research Institute, La Jolla, CA 92037.
Juan Carlos Zúñiga-PflückerBiological Sciences Platform, Sunnybrook Research Institute, Toronto, ON M4N 3M5 Canada.
Dietmar J KappesBlood Cell Development and Function Program, Fox Chase Cancer Center, Philadelphia, PA 19111.
David L WiestBlood Cell Development and Function Program, Fox Chase Cancer Center, Philadelphia, PA 19111; David.Wiest@fccc.edu.
Fox Chase Cancer Center · USScripps Research Institute · USSunnybrook Research InstituteUniversity of Toronto · CA

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
The role of TCR, ligand, and signal strength in human γδ T cell developmentP01AI102853 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI Maria Ciofani · 2014 to 2026
$26.3M
TRAINING PROGRAM IN CANCER RESEARCHT32CA009035 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHERNOFF, JONATHAN · 1985 to 2020
$10.5M
Structural Bioinformatics of Proteins and Protein Complexes and Applications to Cancer BiologyR35GM122517 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI ROLAND L DUNBRACK · 2017 to 2026
$6.3M
Bayesian Statistics and Algorithms for Homology ModelingR01GM084453 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI DUNBRACK, ROLAND L · 2008 to 2016
$2.6M
Control of Gamma-Delta T Cell Lineage CommitmentF32AI098241 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI COFFEY, FRANCIS J. · 2012 to 2013
$106k
Molecular mechanisms of gamma/delta T cell lineage commitmentF32AI120541 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI FAHL, SHAWN P. · 2016 to 2016
$56k
CIHR MOP-42387NCI NIH HHS P30 CA006927NCI NIH HHS T32 CA009035NIAID NIH HHS F32 AI098241NIAID NIH HHS F32 AI120541NIAID NIH HHS P01 AI102853NIGMS NIH HHS R01 GM084453NIGMS NIH HHS R35 GM122517
6 · The paper itself

Abstract

Unlike αβ-T lineage cells, where the role of ligand in intrathymic selection is well established, the role of ligand in the development of γδ-T cells remains controversial. Here we provide evidence for the role of a bona fide selecting ligand in shaping the γδ-T cell-receptor (TCR) repertoire. Reactivity of the γδ-TCR with the major histocompatibility complex (MHC) Class Ib ligands, H2-T10/22, is critically dependent upon the EGYEL motif in the complementarity determining region 3 (CDR3) of TCRδ. In the absence of H2-T10/22 ligand, the commitment of H2-T10/22 reactive γδ-T cells to the γδ fate is diminished, and the specification of those γδ committed cells to the IFN-γ or interleukin-17 effector fate is altered. Furthermore, those cells that do adopt the γδ fate and mature exhibit a profound alteration in the γδTCR repertoire, including depletion of the EGYEL motif and reductions in both CDR3δ length and charge. Taken together, these data suggest that ligand plays an important role in shaping the TCR repertoire of γδ-T cells.

Indexed as

AnimalsCell LineageLigandsMiceProtein BindingReceptors, Antigen, T-Cell, gamma-deltaT-Lymphocyte SubsetsLigandsReceptors, Antigen, T-Cell, gamma-deltaH2-Trepertoire selectionγδ-T cell ligandγδ-T cellsγδ-T lineage commitment

Identifiers

PMID29432160
PMCPMC5828614
OpenAlexW2790582149

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.