Evidence map›Paper›PMID 29431741›Full record

ArticleNature biotechnology2018

Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.

Ajaya K Biswal, Melani A Atmodjo, Mi Li, Holly L Baxter, Chang Geun Yoo, Yunqiao Pu, Yi-Ching Lee, Mitra Mazarei, Ian M Black, Ji-Yi Zhang and 32 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 176 citations in OpenAlex.

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  20. Building an extensible cell wall.Plant physiology · 2022
    Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 2 institutions in 2 countries.

Ajaya K BiswalDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Melani A AtmodjoDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.ORCID 0000-0001-5176-0008
Mi LiDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0001-7523-1266
Holly L BaxterDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Chang Geun YooDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Yunqiao PuDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0003-2554-1447
Yi-Ching LeeDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Mitra MazareiDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Ian M BlackComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA.
Ji-Yi ZhangDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Hema RamannaDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Adam L BrayDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Zachary R KingDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Peter R LaFayetteDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Sivakumar PattathilComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA.
Bryon S DonohoeDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0002-2272-5059
Sushree S MohantyComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA.
David RynoComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA.
Kelsey YeeDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Olivia A ThompsonDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Miguel RodriguezDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Alexandru DumitracheDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Jace NatzkeDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Kim WinkelerDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Cassandra CollinsDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Xiaohan YangDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0001-5207-4210
Li TanDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Robert W SykesDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Erica L GjersingDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Angela ZiebellDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Geoffrey B TurnerDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Stephen R DeckerDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0001-7002-9034
Michael G HahnComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA.ORCID 0000-0003-2136-5191
Brian H DavisonDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Michael K UdvardiDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Jonathan R MielenzDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Mark F DavisDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0003-4541-9852
Richard S NelsonDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Wayne A ParrottDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Arthur J RagauskasDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
C Neal StewartDOE-BioEnergy Science Center (BESC), Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Debra MohnenDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.
Oak Ridge National Laboratory · USUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell walls in crops and trees have been engineered for production of biofuels and commodity chemicals, but engineered varieties often fail multi-year field trials and are not commercialized. We engineered reduced expression of a pectin biosynthesis gene (Galacturonosyltransferase 4, GAUT4) in switchgrass and poplar, and find that this improves biomass yields and sugar release from biomass processing. Both traits were maintained in a 3-year field trial of GAUT4-knockdown switchgrass, with up to sevenfold increased saccharification and ethanol production and sixfold increased biomass yield compared with control plants. We show that GAUT4 is an α-1,4-galacturonosyltransferase that synthesizes homogalacturonan (HG). Downregulation of GAUT4 reduces HG and rhamnogalacturonan II (RGII), reduces wall calcium and boron, and increases extractability of cell wall sugars. Decreased recalcitrance in biomass processing and increased growth are likely due to reduced HG and RGII cross-linking in the cell wall.

Indexed as

BiofuelsBiomassBoronCalciumCell WallCrops, AgriculturalGlucuronosyltransferasePanicumPectinsPlants, Genetically ModifiedPopulusSugarsBiofuelsBoronCalciumGlucuronosyltransferasePectinspolygalacturonic acidrhamnogalacturonan IISugars

Identifiers

PMID29431741
OpenAlexW2790120223

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.