Evidence map›Paper›PMID 29427007›Full record

ArticleCurrent microbiology2018

Proteomic Analysis of Normal Expression Differences Exist in Bacillus Subtilis 168 Cultivation.

Jian-Qin Wang, Miao Yu, Ying Zhou, Bang-Ce Ye

Abstract read
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In one paragraph

Article in Current microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jian-Qin WangDepartment of Food Science and Technology, School of Bioengineering, East China University of Science and Technology, Meilong RD 130, Shanghai, 200237, China.
Miao YuDepartment of Food Science and Technology, School of Bioengineering, East China University of Science and Technology, Meilong RD 130, Shanghai, 200237, China.
Ying ZhouDepartment of Food Science and Technology, School of Bioengineering, East China University of Science and Technology, Meilong RD 130, Shanghai, 200237, China. zhouying@ecust.edu.cn.
Bang-Ce YeLab of Biosystems and Microanalysis, State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Meilong RD 130, Shanghai, 200237, China. bcye@ecust.edu.cn.

Funding

Fundamental Research Funds for the Central Universities 222201714051National Natural Science Foundation of China 31401592
6 · The paper itself

Abstract

Biological science discovery often involves comparing conditions to a normal state, but little is known about "normal." Therefore, we used proteomic strategy to compare data from replicate samples of Bacillus subtilis 168 which were grown under identical condition. The results show that 294 differentially expressed proteins were annotated in 88 Gene Ontology functional groups and enriched in 13 KEGG pathways. We assume that normal expression differences are associated with adaptation to diverse environments. Moreover, five proteins (CotY, ThiG, SspA, SspB, and SspE) and their related genes were identified as having significantly different expressions at translational and transcriptional levels. Most of them are related to stress resistance and germination, indicating that normal expression differences can be regarded as a rapid response mechanism for survival. However, unstable protein expression may cause some fermentative problems that were observed in histidine and sulfur metabolism pathways. Our study facilitates dissection of the influence of biological variance on cultivation safety and stability.

Indexed as

ProteomicsBacillus subtilisBacterial ProteinsGene Expression Regulation, BacterialHistidineSulfurTranscription, GeneticBacterial ProteinsHistidineSulfur

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.