Evidence map›Paper›PMID 29426835›Full record

ArticleScientific reports2018

Transcriptome analysis and prognosis of ALDH isoforms in human cancer.

Peter Mu-Hsin Chang, Che-Hong Chen, Chi-Chun Yeh, Hsueh-Ju Lu, Tze-Tze Liu, Ming-Huang Chen, Chun-Yu Liu, Alexander T H Wu, Muh-Hwa Yang, Shyh-Kuan Tai and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Peter Mu-Hsin ChangDepartment of Oncology, Taipei Veterans General Hospital, Taipei, 112, Taiwan.
Che-Hong ChenDepartment of Chemical and Systems Biology, Stanford University, School of Medicine, Stanford, CA, 94305, USA.
Chi-Chun YehJin An Clinic, New Taipei City, 24256, Taiwan.
Hsueh-Ju LuDivision of Medical Oncology, Department of Internal Medicine, Chung Shan Medical University Hospital, Taichung, Taiwan.
Tze-Tze LiuGenome Research Center, National Yang-Ming University, Taipei, 112, Taiwan.
Ming-Huang ChenDepartment of Oncology, Taipei Veterans General Hospital, Taipei, 112, Taiwan.
Chun-Yu LiuDepartment of Oncology, Taipei Veterans General Hospital, Taipei, 112, Taiwan.
Alexander T H WuThe Ph.D. Program for Translational Medicine, College of Science and Technology, Taipei Medical University, Taipei, 110, Taiwan.
Muh-Hwa YangDepartment of Oncology, Taipei Veterans General Hospital, Taipei, 112, Taiwan.
Shyh-Kuan TaiFaculty of Medicine, National Yang Ming University, Taipei, 112, Taiwan.
Daria Mochly-RosenDepartment of Chemical and Systems Biology, Stanford University, School of Medicine, Stanford, CA, 94305, USA. mochly@stanford.edu.
Chi-Ying F HuangInstitute of Biopharmaceutical Sciences, National Yang Ming University, Taipei, 112, Taiwan. cyhuang5@ym.edu.tw.
Taipei Veterans General Hospital · TWStanford University · USChung Shan Medical University Hospital · TWNational Taiwan University · TWNational Yang Ming Chiao Tung University · TWNational Yang Ming University Hospital · TWTaipei Medical University · TW

Funding

MECHANISMS OF ETHANOL-INDUCED CARDIAC PROTECTIONR01AA011147 · NIAAA · STANFORD UNIVERSITY · PI DARIA MOCHLY-ROSEN · 1996 to 2026
$8.2M
Mechanisms of Ethanol-Induced Cardiac ProtectionR37AA011147 · NIAAA · STANFORD UNIVERSITY · PI MOCHLY-ROSEN, DARIA · 2009 to 2018
$5.3M
NIAAA NIH HHS R01 AA011147NIAAA NIH HHS R37 AA011147
6 · The paper itself

Abstract

Overexpression of ALDH is associated with cancer stem-like features and poor cancer prognosis. High ALDH activity has been observed in cancer stem-like cells. There are a total of 19 human ALDH isoforms, all of which are associated with reducing oxidative stress and protecting cells from damage. However, it is unknown whether all ALDHs are associated with poor cancer prognosis and which ones play a significant role in cancer progression. In this study, we used RNA sequencing data from The Cancer Genome Atlas (TCGA) to evaluate the differential expression of 19 ALDH isoforms in 5 common human cancers. The 19 ALDH genes were analyzed with an integrating meta-analysis of cancer prognosis. Genotyping and next-generation RNA sequencing for 30 pairwise samples of head and neck squamous cell carcinoma were performed and compared with the TCGA cohort. The analysis showed that each ALDH isoform had a specific differential expression pattern, most of which were related to prognosis in human cancer. A lower expression of ALDH2 in the tumor was observed, which was independent from the ALDH2 rs671 SNP variant and the expression of other mitochondria-associated protein coding genes. This study provides new insight into the association between ALDH expression and cancer prognosis.

Indexed as

Gene Expression Regulation, EnzymologicPolymorphism, Single NucleotideAldehyde DehydrogenaseBiomarkers, TumorCarcinoma, Squamous CellCase-Control StudiesCell MovementCell ProliferationCohort StudiesFollow-Up StudiesGene Expression ProfilingGene Expression Regulation, NeoplasticHead and Neck NeoplasmsHumansIsoenzymesPrognosisAldehyde DehydrogenaseBiomarkers, TumorIsoenzymes

Identifiers

PMID29426835
PMCPMC5807355
OpenAlexW2805750368

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.