Evidence map›Paper›PMID 29426371›Full record

ArticleBMC research notes2018

Transcriptomic response in Acropora muricata under acute temperature stress follows preconditioned seasonal temperature fluctuations.

Sonny T M Lee, Shashank Keshavmurthy, Silvia Fontana, Mezaki Takuma, Wen-Hua Chou, Chaolun Allen Chen

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Sonny T M LeeSection of Gastroenterology, Hepatology and Nutrition, Department of Medicine, University of Chicago Medicine, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-8073-989X
Shashank KeshavmurthyBiodiversity Research Center, Academia Sinica, Taipei, Taiwan. coralresearchtaiwan@gmail.com.
Silvia FontanaBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Mezaki TakumaBiological Institute on Kuroshio, Otsuki, Kochi, Japan.
Wen-Hua ChouBiodiversity Research Center, Academia Sinica, Taipei, Taiwan.
Chaolun Allen ChenBiodiversity Research Center, Academia Sinica, Taipei, Taiwan. cac@gate.sinica.edu.tw.
National Taiwan Normal University · TWBiodiversity Research Center, Academia Sinica · TWNational Taiwan Ocean University · TWUniversity of Chicago · US

Funding

Academia Sinica 2012 2014Academia Sinica AS-100-TP2-A02-3
6 · The paper itself

Abstract

objectiveGlobal climate change has resulted in the decline of health and condition of various coral reefs worldwide. Here, we describe expression profiles of Acropora muricata collected during opposing seasons in Otsuki, Kochi, Japan to define the capacity of corals to cope with changing environmental conditions. Coral communities in Otsuki experience large temperature fluctuations between the winter (~ 16 °C) and summer (~ 27 °C).

resultsCoral nubbins that were collected in the summer showed no change in photochemical efficiency when exposed to thermal or cold stress, while winter samples showed a decrease in photochemical health when subjected to thermal stress. Under cold stress, corals that were collected in the summer showed an up-regulation of actin-related protein and serine/threonine protein kinase, while corals collected during the winter did not show any cellular stress. On the other hand, under thermal stress, the most notable change was the up-regulation of phosphoenolpyruvate carboxykinase in corals that were collected during the winter season. Our observations in the differential genes expressed under temperature-derived stress suggest that A. muricata from Kochi may maintain physiological resilience due to the frequently encountered environmental stress, and this may play a role in the coral's thermal tolerance.

Indexed as

SeasonsTemperatureTranscriptomeAnimalsAnthozoaJapanStress, PhysiologicalAdaptationCoralhsp70Phosphoenolpyruvate carboxykinaseTemperature stressTranscriptomics

Identifiers

PMID29426371
PMCPMC5807827
OpenAlexW2795719930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.