Evidence map›Paper›PMID 29426343›Full record

ArticleParticle and fibre toxicology2018

Differences in MWCNT- and SWCNT-induced DNA methylation alterations in association with the nuclear deposition.

Deniz Öner, Manosij Ghosh, Hannelore Bové, Matthieu Moisse, Bram Boeckx, Radu C Duca, Katrien Poels, Katrien Luyts, Eveline Putzeys, Kirsten Van Landuydt and 5 more

Open access · goldAbstract read
In one paragraph

Article in Particle and fibre toxicology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. The application of label-free Raman microscopy to monitor particle-cell interactions inComputational and structural biotechnology journal · 2025
    Article
  4. Article
  5. The Effect of Nanomaterials on DNA Methylation: A Review.Nanomaterials (Basel, Switzerland) · 2023
    Review
  6. Article
  7. Review
  8. Applying the exposome concept to working life health: The EU EPHOR project.Environmental epidemiology (Philadelphia, Pa.) · 2022
    Article
  9. Article
  10. Epigenetic Mechanisms in Understanding Nanomaterial-Induced Toxicity.Advances in experimental medicine and biology · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Epigenetic Effects of Nanomaterials and Nanoparticles.Journal of nanobiotechnology · 2021
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Deniz ÖnerLaboratory of Toxicology, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Manosij GhoshLaboratory of Toxicology, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Hannelore BovéCentre for Surface Chemistry and Catalysis, KU Leuven, Celestijnenlaan 200F, 3001, Leuven, Belgium.
Matthieu MoisseLaboratory for Translational Genetics, Department of Human Genetics, KU Leuven, 3000, Leuven, Belgium.
Bram BoeckxLaboratory for Translational Genetics, Department of Human Genetics, KU Leuven, 3000, Leuven, Belgium.
Radu C DucaLaboratory for Occupational and Environmental Hygiene, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Katrien PoelsLaboratory for Occupational and Environmental Hygiene, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Katrien LuytsLaboratory of Toxicology, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Eveline PutzeysLaboratory of Toxicology, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Kirsten Van LanduydtDepartment of Oral Health Sciences, Unit of Biomaterials (BIOMAT), KU Leuven, 3000, Leuven, Belgium.
Jeroen Aj VanoirbeekLaboratory of Toxicology, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Marcel AmelootBiomedical Research Institute, Agoralaan Building C, Hasselt University, 3590, Diepenbeek, Belgium.
Diether LambrechtsLaboratory for Translational Genetics, Department of Human Genetics, KU Leuven, 3000, Leuven, Belgium.
Lode GodderisLaboratory for Occupational and Environmental Hygiene, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium.
Peter Hm HoetLaboratory of Toxicology, Unit of Environment and Health, Department of Public Health and Primary Care, KU Leuven, 3000, Leuven, Belgium. peter.hoet@kuleuven.be.
KU Leuven · BEHasselt University · BEStatistics Belgium · BEVIB-KU Leuven Center for Cancer Biology · BE

Funding

European Respiratory Society (CH) 2014-7310Stichting Tegen Kanker (BE) 2012-218
6 · The paper itself

Abstract

backgroundSubtle DNA methylation alterations mediated by carbon nanotubes (CNTs) exposure might contribute to pathogenesis and disease susceptibility. It is known that both multi-walled carbon nanotubes (MWCNTs) and single-walled carbon nanotubes (SWCNTs) interact with nucleus. Such, nuclear-CNT interaction may affect the DNA methylation effects. In order to understand the epigenetic toxicity, in particular DNA methylation alterations, of SWCNTs and short MWCNTs, we performed global/genome-wide, gene-specific DNA methylation and RNA-expression analyses after exposing human bronchial epithelial cells (16HBE14o- cell line). In addition, the presence of CNTs on/in the cell nucleus was evaluated in a label-free way using femtosecond pulsed laser microscopy.

resultsGenerally, a higher number of SWCNTs, compared to MWCNTs, was deposited at both the cellular and nuclear level after exposure. Nonetheless, both CNT types were in physical contact with the nuclei. While particle type dependency was noticed for the identified genome-wide and gene-specific alterations, no global DNA methylation alteration on 5-methylcytosine (5-mC) sites was observed for both CNTs. After exposure to MWCNTs, 2398 genes were hypomethylated (at gene promoters), and after exposure to SWCNTs, 589 CpG sites (located on 501 genes) were either hypo- (N = 493 CpG sites) or hypermethylated (N = 96 CpG sites). Cells exposed to MWCNTs exhibited a better correlation between gene promoter methylation and gene expression alterations. Differentially methylated and expressed genes induced changes (MWCNTs > SWCNTs) at different cellular pathways, such as p53 signalling, DNA damage repair and cell cycle. On the other hand, SWCNT exposure showed hypermethylation on functionally important genes, such as SKI proto-oncogene (SKI), glutathione S-transferase pi 1 (GTSP1) and shroom family member 2 (SHROOM2) and neurofibromatosis type I (NF1), which the latter is both hypermethylated and downregulated.

conclusionAfter exposure to both types of CNTs, epigenetic alterations may contribute to toxic or repair response. Moreover, our results suggest that the observed differences in the epigenetic response depend on particle type and differential CNT-nucleus interactions.

Indexed as

BronchiCell LineCell NucleusCell SurvivalDNA MethylationEpigenesis, GeneticEpithelial CellsGenome-Wide Association StudyHumansNanotubes, CarbonParticle SizeProto-Oncogene MasStructure-Activity RelationshipSurface PropertiesMAS1 protein, humanNanotubes, CarbonProto-Oncogene MasCarbon nanotubesDNA methylationEpigeneticsEpigenomicsGene expressionGenotoxicityIn vitroNanomaterialsNanoparticlesNuclear uptakeToxicity

Identifiers

PMID29426343
PMCPMC5807760
OpenAlexW2794800757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.