Evidence map›Paper›PMID 29424686›Full record

ArticleeLife2018

Gene-specific mechanisms direct glucocorticoid-receptor-driven repression of inflammatory response genes in macrophages.

Maria A Sacta, Bowranigan Tharmalingam, Maddalena Coppo, David A Rollins, Dinesh K Deochand, Bradley Benjamin, Li Yu, Bin Zhang, Xiaoyu Hu, Rong Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 70 citations in OpenAlex.

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  12. The Metabolic Syndrome, a Human Disease.International journal of molecular sciences · 2024
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  15. Therapeutic Efficacy of Medicinal Plants with Allopathic Medicine in Musculoskeletal Diseases.International journal of plant, animal and environmental sciences · 2024
    Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Maria A SactaWeill Cornell/ Rockefeller/ Sloan Kettering Tri-Institutional MD-PhD Program, New York, United States.
Bowranigan TharmalingamHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.
Maddalena CoppoHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.
David A RollinsHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.
Dinesh K DeochandHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.
Bradley BenjaminHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.
Li YuTsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing, China.
Bin ZhangInstitute for Immunology and School of Medicine, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0001-6232-6768
Xiaoyu HuHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.
Rong LiDepartment of Molecular Medicine, The University of Texas Health Science Center at San Antonio, San Antonio, United States.ORCID http://orcid.org/0000-0002-6471-6580
Yurii ChinenovHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.
Inez RogatskyHospital for Special Surgery Research Institute, The David Rosensweig Genomics Center, New York, United States.ORCID http://orcid.org/0000-0003-3514-5077
Hospital for Special Surgery · USCenter for Life Sciences · CNThe University of Texas Health Science Center at San Antonio · USTsinghua University · CN

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Glucocorticoid-regulated transcription networks in macrophage biologyR01DK099087 · NIDDK · HOSPITAL FOR SPECIAL SURGERY · PI INEZ ROGATSKY · 2014 to 2026
$6.0M
Crosstalk between BRCA1 and Transcription in Breast CancerR01CA220578 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LI, RONG · 2017 to 2022
$2.1M
NCI NIH HHS R01 CA220578NIDDK NIH HHS R01 DK099087NIDDK NIH HHS R01DK099087NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32GM007739
6 · The paper itself

Abstract

The glucocorticoid receptor (GR) potently represses macrophage-elicited inflammation, however, the underlying mechanisms remain obscure. Our genome-wide analysis in mouse macrophages reveals that pro-inflammatory paused genes, activated via global negative elongation factor (NELF) dissociation and RNA Polymerase (Pol)2 release from early elongation arrest, and non-paused genes, induced by de novo Pol2 recruitment, are equally susceptible to acute glucocorticoid repression. Moreover, in both cases the dominant mechanism involves rapid GR tethering to p65 at NF-kB-binding sites. Yet, specifically at paused genes, GR activation triggers widespread promoter accumulation of NELF, with myeloid cell-specific NELF deletion conferring glucocorticoid resistance. Conversely, at non-paused genes, GR attenuates the recruitment of p300 and histone acetylation, leading to a failure to assemble BRD4 and Mediator at promoters and enhancers, ultimately blocking Pol2 initiation. Thus, GR displays no preference for a specific pro-inflammatory gene class; however, it effects repression by targeting distinct temporal events and components of transcriptional machinery.

Indexed as

Gene Expression RegulationInflammationTranscription, GeneticAnimalsCells, CulturedMacrophagesMice, Inbred C57BLMice, KnockoutMice, TransgenicReceptors, GlucocorticoidReceptors, Glucocorticoidchromosomesgenesglucocorticoid receptorimmunologyinflammationmacrophagesmouseRNA Polymerase 2transcriptional repressiontranscription initiation and elongation

Identifiers

PMID29424686
PMCPMC5821458
OpenAlexW2786356824

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.