Evidence map›Paper›PMID 29424055›Full record

ArticleMicrobiologyOpen2018

Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates.

Anna Nilsson, Astrid Skarp, Cecilia Johansson, René Kaden, Lars Engstrand, Hilpi Rautelin

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Characterization ofFrontiers in microbiology · 2021
    Article
  4. Genomic and Phenotypic Characterisation ofFrontiers in cellular and infection microbiology · 2020
    Article
  5. Applied and environmental microbiology · 2019
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anna NilssonDepartment of Medical Sciences, Clinical Microbiology, Uppsala University, Uppsala, Sweden.
Astrid SkarpDepartment of Medical Sciences, Clinical Microbiology, Uppsala University, Uppsala, Sweden.
Cecilia JohanssonDepartment of Medical Sciences, Clinical Microbiology, Uppsala University, Uppsala, Sweden.
René KadenDepartment of Medical Sciences, Clinical Microbiology, Uppsala University, Uppsala, Sweden.
Lars EngstrandDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institute, and Science for Life Laboratory, Clinical Genomics, Stockholm, Sweden.
Hilpi RautelinDepartment of Medical Sciences, Clinical Microbiology, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-9692-8473

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Campylobacter jejuni and Campylobacter coli are important bacterial enteropathogens. Poultry is the best-known reservoir for Campylobacter infection but natural bodies of water have also been shown to be important pathways for transmission. Campylobacter can survive in cold water but most of the studies have focused on C. jejuni only. In this paper, we take a closer look at the biology and water survival strategies of C. coli. Eight C. coli isolates cultivated from raw (incoming) surface water at water plants in Sweden were characterized using whole-genome sequencing and phenotypical assays. Phylogenetic analysis assigned the Swedish water isolates to clades 2 and 3, known to include C. coli of environmental origin. In addition, 53 earlier published sequences of C. coli clade 2 and 3 from environmental waters were included for in silico analyses. Generally, clade 2 isolates had larger genomes, which included a functional tricarballylate utilization locus, while clade 3 isolates contained different genes involved in oxidative stress as well as putative virulence factors. The Swedish water isolates of clade 2 formed large, blurry bacterial colonies on agar, whereas clade 3 colonies were smaller. All Swedish isolates were motile, but clade 3 isolates formed larger motility zones on soft agar, and none of these isolates produced biofilm. Although water survival varied between the analyzed isolates, there were hardly any clade-specific significant differences. Our results highlight the diversity of C. coli in general, and show differences in metabolic capabilities and ways to handle oxidative stress between clade 2 and 3 water isolates.

Indexed as

Bacterial ProteinsCampylobacter coliFresh WaterGenome, BacterialPhenotypePhylogenySwedenWater MicrobiologyBacterial ProteinsCampylobacter coliphenotypic identificationwaterborne pathogenswhole-genome sequencing

Identifiers

PMID29424055
PMCPMC6079167

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.