ArticlePeerJ2018
Linking pangenomes and metagenomes: the
Article in PeerJ, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 246 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
246 citing papers in PubMed.
- Functional response to a microbial synbiotic in the gastrointestinal system of children: a randomized clinical trial.Pediatric research · 2023Trial
- Article
- How the social lives of bacteria affect their pangenome.Essays in biochemistry · 2026Review
- Comparative genomics approaches to identify genomic regions associated with the antimicrobial activity ofMicrobial genomics · 2026Article
- DistinguishingmSystems · 2026Article
- Pangenomes of the human oral microbiome.Microbiology resource announcements · 2026Article
- A virulent bacterial signature is associated with the development of recurrence following colorectal cancer surgery.Nature communications · 2026Article
- Phylogenetically diverse MucoralesMicrobial genomics · 2026Article
- Two novel strains isolated from a brackish lake constitute Aeoliella fuhlenseeensis sp. nov. and Bythopirellula superficialaquae sp. nov. in the family Lacipirellulaceae.Scientific reports · 2026Article
- Site-specialization of human oralbioRxiv : the preprint server for biology · 2026Article
- Genomic and phenotypic insights into Pseudocolwellia antarctica sp. nov., a novel psychrotolerant bacterium with symbiotic potential from Antarctic zooplankton.Scientific reports · 2026Article
- Functional gut microbiomes enhance performance in house fly larvae.Applied and environmental microbiology · 2026Article
- Characterisation of Kothea flammea gen. nov., sp. nov., a planctomycete of the family Pirellulaceae isolated from Fjord Schlei in the Baltic Sea.Scientific reports · 2026Article
- The novel genus Brakhagea gen. nov. is constituted by four planctomycetal species isolated from aquatic environments in Northern Germany.Scientific reports · 2026Article
- Article
- Genomic and physiological characterization of Aliivibrio sp. REG001485: A specialized functional ecotype for long-term bioluminescent signaling.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2026Article
- Genomic and functional insights into aromatic compound degradation byMicrobiology spectrum · 2026Article
- The genomic history of Streptococcus mutans from the Mesolithic until modern times.Genome biology · 2026Article
- Segmented filamentous bacteria are worldwide human gut commensals.Nature communications · 2026Article
- Genome Analysis Reveals Diversity and Functional Potential of Novel Janthinobacterium Species From Subarctic Soils.MicrobiologyOpen · 2026Article
186 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
Pangenomes offer detailed characterizations of core and accessory genes found in a set of closely related microbial genomes, generally by clustering genes based on sequence homology. In comparison, metagenomes facilitate highly resolved investigations of the relative distribution of microbial genomes and individual genes across environments through read recruitment analyses. Combining these complementary approaches can yield unique insights into the functional basis of microbial niche partitioning and fitness, however, advanced software solutions are lacking. Here we present an integrated analysis and visualization strategy that provides an interactive and reproducible framework to generate pangenomes and to study them in conjunction with metagenomes. To investigate its utility, we applied this strategy to a
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.