Evidence map›Paper›PMID 29423054›Full record

ArticleOncotarget2018

Copy number profiles of paired primary and metastatic colorectal cancers.

Futoshi Kawamata, Ann-Marie Patch, Katia Nones, Catherine Bond, Diane McKeone, Sally-Ann Pearson, Shigenori Homma, Cheng Liu, Lochlan Fennell, Troy Dumenil and 12 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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  6. NAR cancer · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Futoshi KawamataConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Ann-Marie PatchMedical Genomics Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Katia NonesMedical Genomics Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Catherine BondConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Diane McKeoneConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Sally-Ann PearsonConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Shigenori HommaHokkaido University Graduate School of Medicine, Sapporo, Japan.
Cheng LiuConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Lochlan FennellConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Troy DumenilConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Gunter HartelStatistics Group, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Nozomi KobayasiHokkaido University Graduate School of Medicine, Sapporo, Japan.
Hideki YokooHokkaido University Graduate School of Medicine, Sapporo, Japan.
Moto FukaiHokkaido University Graduate School of Medicine, Sapporo, Japan.
Hiroshi NishiharaHokkaido University Graduate School of Medicine, Sapporo, Japan.
Toshiya KamiyamaHokkaido University Graduate School of Medicine, Sapporo, Japan.
Matthew E BurgeRoyal Brisbane and Women's Hospital, Brisbane, Australia.
Christos S KarapetisFlinders University, Adelaide, Australia.
Akinobu TaketomiHokkaido University Graduate School of Medicine, Sapporo, Japan.
Barbara LeggettConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Nicola WaddellMedical Genomics Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
Vicki WhitehallConjoint Gastroenterology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia.
QIMR Berghofer Medical Research Institute · AUHokkaido University · JPUniversity of Queensland · AUFlinders University · AURoyal Brisbane and Women's Hospital · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Liver metastasis is the major cause of death following a diagnosis of colorectal cancer (CRC). In this study, we compared the copy number profiles of paired primary and liver metastatic CRC to better understand how the genomic structure of primary CRC differs from the metastasis. Paired primary and metastatic tumors from 16 patients and their adjacent normal tissue samples were analyzed using single nucleotide polymorphism arrays. Genome-wide chromosomal copy number alterations were assessed, with particular attention to 188 genes known to be somatically altered in CRC and 24 genes that are clinically actionable in CRC. These data were analyzed with respect to the timing of primary and metastatic tissue resection and with exposure to chemotherapy. The genomic differences between the tumor and paired metastases revealed an average copy number discordance of 22.0%. The pairs of tumor samples collected prior to treatment revealed significantly higher copy number differences compared to post-therapy liver metastases (

Indexed as

chemotherapycolorectal cancercopy number alterationsliver metastasisloss of heterozygosity

Identifiers

PMID29423054
PMCPMC5790471
OpenAlexW2772967137

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.