Evidence map›Paper›PMID 29422643›Full record

ArticleScientific reports2018

RNA-seq transcriptome analysis of breast cancer cell lines under shikonin treatment.

Kuo-Hua Lin, Ming-Yii Huang, Wei-Chung Cheng, Shu-Chi Wang, Shih-Hua Fang, Hung-Pin Tu, Chia-Cheng Su, Yung-Li Hung, Po-Len Liu, Chi-Shuo Chen and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
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  6. Pharmacological Significance ofFoods (Basel, Switzerland) · 2024
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  14. Food science & nutrition · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Kuo-Hua LinDepartment of Surgery, Changhua Christian Hospital, Changhua City, 50006, Taiwan.
Ming-Yii HuangDepartment of Radiation Oncology, Cancer Center, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung, 80708, Taiwan.
Wei-Chung ChengGraduate Institute of Biomedical Sciences, China Medical University, Taichung, 40402, Taiwan.
Shu-Chi WangHealth Management Center, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung, 80708, Taiwan.
Shih-Hua FangInstitute of Athletics, National Taiwan University of Sport, Taichung, 40404, Taiwan.
Hung-Pin TuDepartment of Public Health and Environmental Medicine, School of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, 80708, Taiwan.ORCID 0000-0003-1044-2673
Chia-Cheng SuDivision of Urology, Department of Surgery, Chi-Mei Medical Center, Tainan, 71004, Taiwan.
Yung-Li HungGraduate School of Sport Sciences, Waseda University, Tokorozawa, 359-1192, Japan.
Po-Len LiuDepartment of Respiratory Therapy, College of Medicine, Kaohsiung Medical University, Kaohsiung, 80708, Taiwan.
Chi-Shuo ChenDepartment of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu, 30013, Taiwan.
Yu-Ting WangGraduate Institute of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, 80708, Taiwan.
Chia-Yang LiGraduate Institute of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, 80708, Taiwan. chiayangli@kmu.edu.tw.ORCID 0000-0001-5689-9850
Kaohsiung Medical University · TWChanghua Christian Hospital · TWChina Medical University · TWNational Taiwan University of Sport · TWNational Tsing Hua University · TWWaseda University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shikonin is a naphthoquinone isolated from the dried root of Lithospermum erythrorhizon, an herb used in Chinese medicine. Although several studies have indicated that shikonin exhibits antitumor activity in breast cancer, the mechanism of action remains unclear. In the present study, we performed transcriptome analysis using RNA-seq and explored the mechanism of action of shikonin in regulating the growth of different types of breast cancer cells. The IC

Indexed as

ApoptosisBreast NeoplasmsCell Cycle CheckpointsCell Line, TumorCell ProliferationDual Specificity Phosphatase 1Dual Specificity Phosphatase 2Gene Expression ProfilingHumansLithospermumMAP Kinase Signaling SystemMCF-7 CellsNaphthoquinonesRNASignal TransductionTranscriptomeDual Specificity Phosphatase 1Dual Specificity Phosphatase 2DUSP1 protein, humanDUSP2 protein, humanNaphthoquinonesRNAshikonin

Identifiers

PMID29422643
PMCPMC5805692
OpenAlexW2807261444

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.