Evidence map›Paper›PMID 29416957›Full record

ArticleTranslation (Austin, Tex.)2017

A Staufen1-mediated decay pathway influences the local transcriptome in axons.

Ju Youn Kim, Alessia Deglincerti, Samie R Jaffrey

Open access · diamondAbstract read
In one paragraph

Article in Translation (Austin, Tex.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ju Youn KimDepartment of Pharmacology, Weill-Cornell Medical College, Cornell University, New York, NY, USA.
Alessia DeglincertiDepartment of Pharmacology, Weill-Cornell Medical College, Cornell University, New York, NY, USA.
Samie R JaffreyDepartment of Pharmacology, Weill-Cornell Medical College, Cornell University, New York, NY, USA.
Cornell University · US

Funding

Uncovering polyadenylation pathways in neuronal signalingR01NS056306 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI JAFFREY, SAMIE R · 2007 to 2018
$4.2M
NINDS NIH HHS R01 NS056306
6 · The paper itself

Abstract

Local translation is critical for diverse aspects of neuronal function, including mediating responses of elongating axons to guidance cues and other signaling molecules. A major determinant of the protein synthetic capacity of axons and growth cones is the specific set of mRNAs that are trafficked to these sites. However, recently it has become clear that the axonal transcriptome can also be shaped by local RNA degradation mechanisms, such as nonsense-mediated decay. Here we show that Staufen1-mediated decay can also occur within axons and mediate degradation of specific axonal transcripts. We show that Staufen1 and Upf1, which function together in Staufen1-mediated decay, are localized in growth cones. Selective depletion of Staufen1 from neurons results in a complex pattern of transcriptional alterations, with a subset of transcripts showing increased expression and increased RNA half-life consistent with their regulation by Staufen1-mediated decay. Additionally, we show certain transcripts, such as

Indexed as

axonsgrowth coneslocal translationmRNA degradationmRNA stabilityStaufen1

Identifiers

PMID29416957
PMCPMC5798196
OpenAlexW2775716764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.