Evidence map›Paper›PMID 29416677›Full record

ArticleOncotarget2018

Identification of human age-associated gene co-expressions in functional modules using liquid association.

Jialiang Yang, Yufang Qin, Tiantian Zhang, Fayou Wang, Lihong Peng, Lijuan Zhu, Dawei Yuan, Pan Gao, Jujuan Zhuang, Zhongyang Zhang and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 2 countries.

Jialiang YangCollege of Information Engineering, Changsha Medical University, Changsha, Hunan, P. R. China.
Yufang QinDepartment of Mathematics, Shanghai Ocean University, Shanghai, China.
Tiantian ZhangCollege of Information Engineering, Changsha Medical University, Changsha, Hunan, P. R. China.
Fayou WangSchool of Mathematics and Information Science, Henan Polytechnic University, Henan, P. R. China.
Lihong PengCollege of Information Engineering, Changsha Medical University, Changsha, Hunan, P. R. China.
Lijuan ZhuDepartment of Mathematics, Hebei University of Science and Technology, Shijiazhuang, Hebei, China.
Dawei YuanGeneis (Beijing) Co. Ltd., Beijing, P. R. China.
Pan GaoDepartment of Mathematics, Dalian Maritime University, Dalian, Liaoning, P. R. China.
Jujuan ZhuangDepartment of Mathematics, Dalian Maritime University, Dalian, Liaoning, P. R. China.
Zhongyang ZhangDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jun WangDepartment of Mathematics, Shanghai Normal University, Shanghai, P. R. China.
Yun FangDepartment of Mathematics, Shanghai Normal University, Shanghai, P. R. China.
Changsha Medical University · CNDalian Maritime University · CNShanghai Normal University · CNCipher Gene (China) · CNHebei University of Science and Technology · CNHenan Polytechnic University · CNIcahn School of Medicine at Mount Sinai · USShanghai Ocean University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aging is a major risk factor for age-related diseases such as certain cancers. In this study, we developed Age Associated Gene Co-expression Identifier (AAGCI), a liquid association based method to infer age-associated gene co-expressions at thousands of biological processes and pathways across 9 human tissues. Several hundred to thousands of gene pairs were inferred to be age co-expressed across different tissues, the genes involved in which are significantly enriched in functions like immunity, ATP binding, DNA damage, and many cancer pathways. The age co-expressed genes are significantly overlapped with aging genes curated in the GenAge database across all 9 tissues, suggesting a tissue-wide correlation between age-associated genes and co-expressions. Interestingly, age-associated gene co-expressions are significantly different from gene co-expressions identified through correlation analysis, indicating that aging might only contribute to a small portion of gene co-expressions. Moreover, the key driver analysis identified biologically meaningful genes in important function modules. For example,

Indexed as

aginganti-aging drug predictiongene co-expressionGTExliquid association

Identifiers

PMID29416677
PMCPMC5787419
OpenAlexW2771656380

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.