Evidence map›Paper›PMID 29416086›Full record

ArticleScientific reports2018

Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography.

Dan Bi Lee, Jong-Min Kim, Jong Hyeon Seok, Ji-Hye Lee, Jae Deok Jo, Ji Young Mun, Chelsie Conrad, Jesse Coe, Garrett Nelson, Brenda Hogue and 10 more

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Homogeneous batch micro-crystallization of proteins from ammonium sulfate.Acta crystallographica. Section D, Structural biology · 2021
    Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Dan Bi LeeDepartment of Biotechnology & Bioinformatics, Korea University, Sejong, Korea.
Jong-Min KimDepartment of Electronics & Information Engineering, Korea University, Sejong, Korea.
Jong Hyeon SeokDepartment of Biotechnology & Bioinformatics, Korea University, Sejong, Korea.
Ji-Hye LeeDepartment of Biotechnology & Bioinformatics, Korea University, Sejong, Korea.
Jae Deok JoDepartment of Biotechnology & Bioinformatics, Korea University, Sejong, Korea.
Ji Young MunDepartment of Structure and Function of Neural Network, Korea Brain Research Institute, Daegu, Korea.
Chelsie ConradDepartment of Chemistry, Arizona State University, Tempe, Arizona, USA.
Jesse CoeDepartment of Chemistry, Arizona State University, Tempe, Arizona, USA.ORCID 0000-0002-5544-320X
Garrett NelsonDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Brenda HogueBiodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona, USA.
Thomas A WhiteCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany.
Nadia ZatsepinDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Uwe WeierstallDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany.
Henry ChapmanCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Hamburg, Germany.ORCID 0000-0002-4655-1743
Petra FrommeDepartment of Chemistry, Arizona State University, Tempe, Arizona, USA.
John SpenceDepartment of Physics, Arizona State University, Tempe, Arizona, USA.
Mi Sook ChungDepartment of Food and Nutrition, Duksung Women's University, Seoul, Korea.
Chang-Hyun OhDepartment of Electronics & Information Engineering, Korea University, Sejong, Korea. ohch@korea.ac.kr.
Kyung Hyun KimDepartment of Biotechnology & Bioinformatics, Korea University, Sejong, Korea. khkim@korea.ac.kr.ORCID 0000-0002-4033-3999

Funding

Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
Rapid Low-Cost Paper-based Biodosimetry that reveals individual organ injuriesU01AI148319 · NIAID · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LABAER, JOSHUA · 2020 to 2024
$2.5M
NIAID NIH HHS U01 AI148319NIGMS NIH HHS R01 GM095583
6 · The paper itself

Abstract

Time-resolved serial femtosecond crystallography with X-ray free electron laser (XFEL) holds the potential to view fast reactions occurring at near-physiological temperature. However, production and characterization of homogeneous micron-sized protein crystals at high density remain a bottleneck, due to the lack of the necessary equipments in ordinary laboratories. We describe here supersaturation-controlled microcrystallization and visualization and analysis tools that can be easily used in any laboratory. The microcrystallization conditions of the influenza virus hemagglutinin were initially obtained with low reproducibility, which was improved by employing a rapid evaporation of hanging drops. Supersaturation-controlled microcrystallization was then developed in a vapor diffusion mode, where supersaturation was induced by evaporation in hanging drops sequentially for durations ranging from 30 sec to 3 min, depending on the protein. It was applied successfully to the microcrystal formation of lysozyme, ferritin and hemagglutinin with high density. Moreover, visualization and analysis tools were developed to characterize the microcrystals observed by light microscopy. The size and density distributions of microcrystals analyzed by the tools were found to be consistent with the results of manual analysis, further validated by high-resolution microscopic analyses. Our supersaturation-controlled microcrystallization and visualization and analysis tools will provide universal access to successful XFEL studies.

Identifiers

PMID29416086
PMCPMC5803221

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.