Evidence map›Paper›PMID 29416063›Full record

ArticleNature communications2018

AhR and SHP regulate phosphatidylcholine and S-adenosylmethionine levels in the one-carbon cycle.

Young-Chae Kim, Sunmi Seok, Sangwon Byun, Bo Kong, Yang Zhang, Grace Guo, Wen Xie, Jian Ma, Byron Kemper, Jongsook Kim Kemper

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 60 citations in OpenAlex.

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  6. Frontiers in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Young-Chae KimDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. ychaekim@illinois.edu.
Sunmi SeokDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Sangwon ByunDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Bo KongDepartment of Pharmacology and Toxicology, School of Pharmacy, Rutgers University, Piscataway, NJ, 08854, USA.ORCID http://orcid.org/0000-0002-8200-7817
Yang ZhangDepartment of Computational and Comparative Genomics Lab, School of Computer Science, Carnegie Melon University, Pittsburgh, PA, 15213, USA.
Grace GuoDepartment of Pharmacology and Toxicology, School of Pharmacy, Rutgers University, Piscataway, NJ, 08854, USA.
Wen XieDepartment of Pharmaceutical Sciences, School of Pharmacy, University of Pittsburgh, Pittsburgh, PA, 15261, USA.
Jian MaDepartment of Computational and Comparative Genomics Lab, School of Computer Science, Carnegie Melon University, Pittsburgh, PA, 15213, USA.
Byron KemperDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Jongsook Kim KemperDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. jongsook@illinois.edu.
University of Illinois Urbana-Champaign · USCarnegie Mellon University · USRutgers, The State University of New Jersey · USUniversity of Pittsburgh · US

Funding

Regulation of Cholesterol Catabolism by Bile AcidsR01DK062777 · NIDDK · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2003 to 2021
$5.8M
Coordination of gut-liver bile acid signaling by FXRR01DK095842 · NIDDK · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KEMPER, JONGSOOK KIM · 2012 to 2021
$3.0M
Computational Methods for Next-Generation Comparative GenomicsR01HG007352 · NHGRI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MA, JIAN · 2014 to 2023
$2.8M
NHGRI NIH HHS R01 HG007352NIDDK NIH HHS R01 DK062777NIDDK NIH HHS R01 DK095842
6 · The paper itself

Abstract

Phosphatidylcholines (PC) and S-adenosylmethionine (SAM) are critical determinants of hepatic lipid levels, but how their levels are regulated is unclear. Here, we show that Pemt and Gnmt, key one-carbon cycle genes regulating PC/SAM levels, are downregulated after feeding, leading to decreased PC and increased SAM levels, but these effects are blunted in small heterodimer partner (SHP)-null or FGF15-null mice. Further, aryl hydrocarbon receptor (AhR) is translocated into the nucleus by insulin/PKB signaling in the early fed state and induces Pemt and Gnmt expression. This induction is blocked by FGF15 signaling-activated SHP in the late fed state. Adenoviral-mediated expression of AhR in obese mice increases PC levels and exacerbates steatosis, effects that are blunted by SHP co-expression or Pemt downregulation. PEMT, AHR, and PC levels are elevated in simple steatosis patients, but PC levels are robustly reduced in steatohepatitis-fibrosis patients. This study identifies AhR and SHP as new physiological regulators of PC/SAM levels.

Indexed as

Carbon CycleAnimalsFibroblast Growth FactorsGlycine N-MethyltransferaseHumansLiverMaleMiceMice, KnockoutNon-alcoholic Fatty Liver DiseasePhosphatidylcholinesPhosphatidylethanolamine N-MethyltransferaseProtein BindingReceptors, Aryl HydrocarbonReceptors, Cytoplasmic and NuclearS-Adenosylmethioninefibroblast growth factor 15, mouseFibroblast Growth FactorsGlycine N-MethyltransferaseGnmt protein, mousenuclear receptor subfamily 0, group B, member 2PEMT protein, mousePhosphatidylcholinesPhosphatidylethanolamine N-MethyltransferaseReceptors, Aryl HydrocarbonReceptors, Cytoplasmic and NuclearS-Adenosylmethionine

Identifiers

PMID29416063
PMCPMC5803255
OpenAlexW2796954216

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.