Evidence map›Paper›PMID 29415008›Full record

ArticlePloS one2018

Genome-wide associations for multiple pest resistances in a Northwestern United States elite spring wheat panel.

Kaori Ando, Sheri Rynearson, Kebede T Muleta, Jhonatan Gedamu, Bedada Girma, Nilsa A Bosque-Pérez, Ming-Shun Chen, Mike O Pumphrey

Abstract readValidation Study
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Identification of two novel Hessian fly resistance genes H35 and H36 in a hard winter wheat line SD06165.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kaori AndoDepartment of Crop and Soil Sciences, Washington State University, Pullman, Washington, United States of America.ORCID 0000-0003-3658-7598
Sheri RynearsonDepartment of Crop and Soil Sciences, Washington State University, Pullman, Washington, United States of America.
Kebede T MuletaDepartment of Crop and Soil Sciences, Washington State University, Pullman, Washington, United States of America.
Jhonatan GedamuEthiopian Institute of Agricultural Research, Holeta Agricultural Research Center, Holeta, Ethiopia.
Bedada GirmaEthiopian Institute of Agricultural Research, Kulumsa Agricultural Research Center, Assela, Ethiopia.
Nilsa A Bosque-PérezDepartment of Entomology, Plant Pathology and Nematology, University of Idaho, Moscow, Idaho, United States of America.
Ming-Shun ChenUnited States Department of Agriculture-Agricultural Research Service and Department of Entomology, Kansas State University, Manhattan, Kansas, United States of America.
Mike O PumphreyDepartment of Crop and Soil Sciences, Washington State University, Pullman, Washington, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Northern areas of the western United States are one of the most productive wheat growing regions in the United States. Increasing productivity through breeding is hindered by several biotic stresses which slow and constrain targeted yield improvement. In order to understand genetic variation for stripe rust (Puccinia striiformis f. sp. tritici), Septoria tritici blotch (Mycosphaerella graminicola), and Hessian fly (Mayetiola destructor) in regional germplasm, a panel of 408 elite spring wheat lines was characterized and genotyped with an Illumina 9K wheat single nucleotide polymorphism (SNP) chip to enable genome-wide association study (GWAS) analyses. Significant marker-trait associations were identified for stripe rust (38 loci), Septoria tritici blotch (8) and Hessian fly (9) resistance. Many of the QTL corresponded with previously reported gene locations or QTL, but we also discovered new resistance loci for each trait. We validated one of the stripe rust resistance loci detected by GWAS in a bi-parental mapping population, which confirmed the detection of Yr15 in the panel. This study elucidated well-defined chromosome regions for multiple pest resistances in elite Northwest germplasm. Newly identified resistance loci, along with SNPs more tightly linked to previously reported genes or QTL will help future breeding and marker assisted selection efforts.

Indexed as

Genome-Wide Association StudyFungiGenes, PlantLinkage DisequilibriumNorthwestern United StatesQuantitative Trait LociTriticum

Identifiers

PMID29415008
PMCPMC5802848

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.