Evidence map›Paper›PMID 29414791›Full record

ArticleThe Journal of biological chemistry2018

Proteasome substrate capture and gate opening by the accessory factor PafE from

Kuan Hu, Jordan B Jastrab, Susan Zhang, Amanda Kovach, Gongpu Zhao, K Heran Darwin, Huilin Li

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Identification of a depupylation regulator for an essential enzyme inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Macrocyclic Peptides that Selectively Inhibit theJournal of medicinal chemistry · 2021
    Article
  12. Review
  13. Review
  14. Article
  15. Psoralen Derivatives as Inhibitors ofMolecules (Basel, Switzerland) · 2020
    Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kuan HuCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, Michigan 49503.
Jordan B JastrabDepartment of Microbiology, New York University School of Medicine, New York, New York 10016.
Susan ZhangDepartment of Microbiology, New York University School of Medicine, New York, New York 10016.
Amanda KovachCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, Michigan 49503.
Gongpu ZhaoCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, Michigan 49503.
K Heran DarwinDepartment of Microbiology, New York University School of Medicine, New York, New York 10016. Electronic address: Heran.Darwin@med.nyu.edu.
Huilin LiCryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, Michigan 49503. Electronic address: Huilin.Li@vai.org.
New York University · USVan Andel Institute · US

Funding

INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
PROTEASOME-DEPENDENT DEGRADATION IN MYCOBACTERIUM TUBERCULOSISR01AI088075 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Katerina Heran Darwin · 2011 to 2026
$6.5M
Structure Biology of Mycobacterium Tuberculosis Pup-Proteasome PathwayR01AI070285 · NIAID · VAN ANDEL RESEARCH INSTITUTE · PI LI, HUILIN · 2007 to 2022
$6.5M
Characterization of a novel cofactor of the M. tuberculosis proteasomeF30AI110067 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI JASTRAB, JORDAN B · 2014 to 2017
$111k
NIAID NIH HHS F30 AI110067NIAID NIH HHS R01 AI070285NIAID NIH HHS R01 AI088075NIAID NIH HHS T32 AI007180
6 · The paper itself

Abstract

In all domains of life, proteasomes are gated, chambered proteases that require opening by activators to facilitate protein degradation. Twelve proteasome accessory factor E (PafE) monomers assemble into a single dodecameric ring that promotes proteolysis required for the full virulence of the human bacterial pathogen

Indexed as

ProteolysisAdenosine TriphosphateAmino Acid MotifsBacterial ProteinsMolecular ChaperonesMycobacterium tuberculosisProteasome Endopeptidase ComplexProtein DomainsAdenosine TriphosphateBacterial ProteinsMolecular ChaperonesPafE protein, Mycobacterium tuberculosisProteasome Endopeptidase Complexcryo-electron microscopyMycobacterium tuberculosisproteasomeProteasome activatorprotein degradationprotein targetingstructural biology

Identifiers

PMID29414791
PMCPMC5880150
OpenAlexW2785600517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.