Evidence map›Paper›PMID 29412690›Full record

ArticleAmerican journal of physiology. Cell physiology2018

Platelet procoagulant phenotype is modulated by a p38-MK2 axis that regulates RTN4/Nogo proximal to the endoplasmic reticulum: utility of pathway analysis.

Özgün Babur, Anh T P Ngo, Rachel A Rigg, Jiaqing Pang, Zhoe T Rub, Ariana E Buchanan, Annachiara Mitrugno, Larry L David, Owen J T McCarty, Emek Demir and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Cell physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. A Sample Preparation Protocol for High Throughput Immunofluorescence of Suspension Cells on an Adherent Surface.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2020
    Article
  10. Article
  11. Large-scale automated machine reading discovers new cancer-driving mechanisms.Database : the journal of biological databases and curation · 2018
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Özgün BaburDepartment of Molecular and Medical Genetics, Oregon Health & Science University , Portland, Oregon.
Anh T P NgoDepartment of Biomedical Engineering, Oregon Health & Science University , Portland, Oregon.
Rachel A RiggDepartment of Biomedical Engineering, Oregon Health & Science University , Portland, Oregon.ORCID 0000-0003-4188-1935
Jiaqing PangDepartment of Biomedical Engineering, Oregon Health & Science University , Portland, Oregon.
Zhoe T RubDepartment of Biomedical Engineering, Oregon Health & Science University , Portland, Oregon.
Ariana E BuchananKnight Cardiovascular Institute, School of Medicine, Oregon Health & Science University , Portland, Oregon.
Annachiara MitrugnoDepartment of Biomedical Engineering, Oregon Health & Science University , Portland, Oregon.
Larry L DavidDepartment of Biochemistry and Molecular Biology, Oregon Health & Science University , Portland, Oregon.
Owen J T McCartyDepartment of Biomedical Engineering, Oregon Health & Science University , Portland, Oregon.
Emek DemirDepartment of Molecular and Medical Genetics, Oregon Health & Science University , Portland, Oregon.
Joseph E AslanDepartment of Biochemistry and Molecular Biology, Oregon Health & Science University , Portland, Oregon.ORCID 0000-0002-8873-0387
Oregon Health & Science University · US

Funding

Characterization of Coagulation Factor-platelet Interactions: Role of FXIR01HL101972 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Owen J McCarty · 2010 to 2026
$8.5M
Pathway Commons: Research Resource for Biological PathwaysU41HG006623 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI SANDER, CHRIS · 2012 to 2017
$5.7M
FXI and SepsisR01GM116184 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LUPU, FLOREA, MCCARTY, OWEN J · 2015 to 2018
$1.9M
NHGRI NIH HHS U41 HG006623NHLBI NIH HHS R01 HL101972NIGMS NIH HHS R01 GM116184
6 · The paper itself

Abstract

Upon encountering physiological cues associated with damaged or inflamed endothelium, blood platelets set forth intracellular responses to ultimately support hemostatic plug formation and vascular repair. To gain insights into the molecular events underlying platelet function, we used a combination of interactome, pathway analysis, and other systems biology tools to analyze associations among proteins functionally modified by reversible phosphorylation upon platelet activation. While an interaction analysis mapped out a relative organization of intracellular mediators in platelet signaling, pathway analysis revealed directional signaling relations around protein kinase C (PKC) isoforms and mitogen-activated protein kinases (MAPKs) associated with platelet cytoskeletal dynamics, inflammatory responses, and hemostatic function. Pathway and causality analysis further suggested that platelets activate a specific p38-MK2 axis to phosphorylate RTN4 (reticulon-4, also known as Nogo), a Bcl-xl sequestration protein and critical regulator of endoplasmic reticulum (ER) physiology. In vitro, we find that platelets drive a p38-MK2-RTN4-Bcl-xl pathway associated with the regulation of the ER and platelet phosphatidylserine exposure. Together, our results support the use of pathway tools in the analysis of omics data sets as a means to help generate novel, mechanistic, and testable hypotheses for platelet studies while uncovering RTN4 as a putative regulator of platelet cell physiological responses.

Indexed as

Blood CoagulationPlatelet ActivationProtein Interaction Mapsbcl-X ProteinBlood PlateletsComputational BiologyDatabases, ProteinEndoplasmic ReticulumEnzyme ActivationHumansIntracellular Signaling Peptides and ProteinsMAP-Kinase-Activated Kinase 2Nogo Proteinsp38 Mitogen-Activated Protein KinasesPhenotypePhosphatidylserinesBCL2L1 protein, humanbcl-X ProteinIntracellular Signaling Peptides and ProteinsMAP-Kinase-Activated Kinase 2Nogo Proteinsp38 Mitogen-Activated Protein KinasesPhosphatidylserinesProtein Serine-Threonine KinasesRTN4 protein, humanBcl-xlCausalPathMAPKAPK2Pathway Commonsplatelets

Identifiers

PMID29412690
PMCPMC6008067
OpenAlexW2786963443

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.