Evidence map›Paper›PMID 29411435›Full record

ArticleMagnetic resonance in medicine2018

Empirical single sample quantification of bias and variance in Q-ball imaging.

Allison E Hainline, Vishwesh Nath, Prasanna Parvathaneni, Justin A Blaber, Kurt G Schilling, Adam W Anderson, Hakmook Kang, Bennett A Landman

Abstract read
In one paragraph

Article in Magnetic resonance in medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Evaluation of inter-site bias and variance in diffusion-weighted MRI.Proceedings of SPIE--the International Society for Optical Engineering · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Allison E HainlineDepartment of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0001-9652-0489
Vishwesh NathDepartment of Computer Science, Vanderbilt University, Nashville, Tennessee, USA.
Prasanna ParvathaneniDepartment of Electrical Engineering, Vanderbilt University, Nashville, Tennessee, USA.
Justin A BlaberDepartment of Electrical Engineering, Vanderbilt University, Nashville, Tennessee, USA.
Kurt G SchillingDepartment of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, USA.
Adam W AndersonDepartment of Biomedical Engineering, Vanderbilt University, Nashville, Tennessee, USA.
Hakmook KangDepartment of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Bennett A LandmanDepartment of Computer Science, Vanderbilt University, Nashville, Tennessee, USA.

Funding

Vanderbilt Institute for Clinical and Translational Research (VICTR) -Identifying correlates of functional immunity in SARS-CoV-2 convalescent plasmaUL1TR002243 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Paul A. Harris, Wesley H Self · 2017 to 2026
$130.7M
VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
Research Project: Sensory and Multisensory Contributions to AutismU54HD083211 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DYKENS, ELISABETH MAY · 2015 to 2019
$7.1M
Postdoctoral Training in Biomedical MRI and MRST32EB001628 · NIBIB · VANDERBILT UNIVERSITY MEDICAL CENTER · PI John C Gore · 2003 to 2026
$7.0M
Controlling Quality and Capturing Uncertainty in Advanced Diffusion Weighted MRIR01EB017230 · NIBIB · VANDERBILT UNIVERSITY · PI LANDMAN, BENNETT A. · 2015 to 2024
$5.1M
The Biological Basis of Diffusion MRI of the BrainR01NS058639 · NINDS · VANDERBILT UNIVERSITY · PI ANDERSON, ADAM W · 2008 to 2016
$3.7M
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1 TR002243NCRR NIH HHS UL1 RR024975NIBIB NIH HHS R01 EB017230NIBIB NIH HHS T32 EB001628NICHD NIH HHS U54 HD083211NINDS NIH HHS R01 NS058639
6 · The paper itself

Abstract

purposeThe bias and variance of high angular resolution diffusion imaging methods have not been thoroughly explored in the literature and may benefit from the simulation extrapolation (SIMEX) and bootstrap techniques to estimate bias and variance of high angular resolution diffusion imaging metrics.

methodsThe SIMEX approach is well established in the statistics literature and uses simulation of increasingly noisy data to extrapolate back to a hypothetical case with no noise. The bias of calculated metrics can then be computed by subtracting the SIMEX estimate from the original pointwise measurement. The SIMEX technique has been studied in the context of diffusion imaging to accurately capture the bias in fractional anisotropy measurements in DTI. Herein, we extend the application of SIMEX and bootstrap approaches to characterize bias and variance in metrics obtained from a Q-ball imaging reconstruction of high angular resolution diffusion imaging data.

resultsThe results demonstrate that SIMEX and bootstrap approaches provide consistent estimates of the bias and variance of generalized fractional anisotropy, respectively. The RMSE for the generalized fractional anisotropy estimates shows a 7% decrease in white matter and an 8% decrease in gray matter when compared with the observed generalized fractional anisotropy estimates. On average, the bootstrap technique results in SD estimates that are approximately 97% of the true variation in white matter, and 86% in gray matter.

conclusionBoth SIMEX and bootstrap methods are flexible, estimate population characteristics based on single scans, and may be extended for bias and variance estimation on a variety of high angular resolution diffusion imaging metrics.

Indexed as

BiasBrainCluster AnalysisDiffusion Tensor ImagingHumansImage Processing, Computer-AssistedModels, StatisticalReproducibility of Resultsbias correctionbootstrapGFAHARDIQ-ballSIMEX

Identifiers

PMID29411435
PMCPMC6078828

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.