Evidence map›Paper›PMID 29410395›Full record

ArticleEmerging microbes & infections2018

Two reassortant types of highly pathogenic H5N8 avian influenza virus from wild birds in Central China in 2016.

Liping Ma, Tao Jin, Hanzhong Wang, Haizhou Liu, Runkun Wang, Yong Li, Guoxiang Yang, Yanping Xiong, Jing Chen, Jun Zhang and 7 more

Open access · goldAbstract read
In one paragraph

Article in Emerging microbes & infections, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Observational
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Circulation of Influenza A(H5N8) Virus, Saudi Arabia.Emerging infectious diseases · 2018
    Article
  9. Avian influenza overview November 2017 - February 2018.EFSA journal. European Food Safety Authority · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Liping MaCAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, Hubei, China.
Tao JinChina National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen, 518120, China.
Hanzhong WangCAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, Hubei, China.
Haizhou LiuCAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, Hubei, China.ORCID http://orcid.org/0000-0002-4727-088X
Runkun WangCAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, Hubei, China.
Yong LiThe monitoring center of wildlife diseases and resource of Hubei, Wuhan, 430071, China.
Guoxiang YangThe monitoring center of wildlife diseases and resource of Hubei, Wuhan, 430071, China.
Yanping XiongThe monitoring center of wildlife diseases and resource of Hubei, Wuhan, 430071, China.
Jing ChenThe monitoring center of wildlife diseases and resource of Hubei, Wuhan, 430071, China.
Jun ZhangThe monitoring center of wildlife diseases and resource of Hubei, Wuhan, 430071, China.
Guang ChenThe monitoring center of wildlife diseases and resource of Hubei, Wuhan, 430071, China.
Wei LiInstitute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Di LiuCAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, Hubei, China.
Peng LinChina National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen, 518120, China.
Yueying HuangChina National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen, 518120, China.
George F GaoCenter for Influenza Research and Early-Warning (CASCIRE), Chinese Academy of Sciences, Beijing, 100101, China.
Quanjiao ChenCAS Key Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, 430071, Hubei, China. chenqj@wh.iov.cn.
Zhejiang Environmental Monitoring Center · CNWuhan Institute of Virology · CNChina National GeneBank · CNChinese Academy of Sciences · CNChinese Center For Disease Control and Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since 2016, the highly pathogenic avian influenza H5N8 virus has emerged in the Central Asian flyway and Europe, causing massive deaths in poultry and wild birds. In this study, we isolated and identified three H5N8 viruses from swan goose and black swans in Hubei province during the 2016/2017 winter season. Whole-genome sequencing and phylogenetic analysis revealed that the three viruses clustered into a group of H5N8 viruses from Qinghai Lake and Europe. A novel reassortment virus from swan goose was distinguished from that of black swans, in that its PA and NP genes were distinct from those of Qinghai Lake viruses. Molecular dating revealed that the ancestral strain of these H5N8 viruses emerged around July 2015. From sequence comparison, we discovered eight amino acid substitutions in HA and NA during the adaption process from poultry to wild birds. The three viruses were isolated from wild birds in the East Asian-Australasian flyway; however, the viral genomes were similar to H5N8 viruses circulating along the Central Asian flyway. From these data, we conclude that wetlands and lakes in Central China may play a key role in disseminating H5N8 viruses between the East Asian-Australasian and Central Asian flyways.

Indexed as

Amino Acid SubstitutionAnimalsAnimals, WildAsiaBird DiseasesBirdsChinaGeeseGenome, ViralInfluenza A Virus, H5N8 SubtypeInfluenza in BirdsPhylogenyReassortant VirusesRNA, ViralSequence Analysis, DNAWhole Genome SequencingRNA, Viral

Identifiers

PMID29410395
PMCPMC5837153
OpenAlexW2807530040

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.