Evidence map›Paper›PMID 29409727›Full record

ArticleEBioMedicine2018

Ancestral Variations of the PCDHG Gene Cluster Predispose to Dyslexia in a Multiplex Family.

Teesta Naskar, Mohammed Faruq, Priyajit Banerjee, Massarat Khan, Rashi Midha, Renu Kumari, Subhashree Devasenapathy, Bharat Prajapati, Sanghamitra Sengupta, Deepti Jain and 3 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The role of GTPase-activating protein ARHGAP26 in human cancers.Molecular and cellular biochemistry · 2022
    Review
  5. Mouse models for the study of clustered protocadherins.Current topics in developmental biology · 2022
    Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. DSCAM promotes self-avoidance in the developing mouse retina by masking the functions of cadherin superfamily members.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Teesta NaskarCellular and Molecular Neuroscience Division, National Brain Research Centre, Manesar, Gurgaon, Haryana 122051, India; Department of Biochemistry, University of Calcutta, Kolkata, West Bengal 700019, India.
Mohammed FaruqGenomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology, New Delhi 110007, India.
Priyajit BanerjeeRegional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, Haryana 121001, India.
Massarat KhanMaharashtra Dyslexia Association, Mumbai, Maharashtra 400088, India.
Rashi MidhaCellular and Molecular Neuroscience Division, National Brain Research Centre, Manesar, Gurgaon, Haryana 122051, India.
Renu KumariGenomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology, New Delhi 110007, India; Academy of Scientific and Innovative Research, CSIR-Institute of Genomics & Integrative Biology (AcSIR-IGIB), New Delhi 110020, India.
Subhashree DevasenapathyCellular and Molecular Neuroscience Division, National Brain Research Centre, Manesar, Gurgaon, Haryana 122051, India.
Bharat PrajapatiCellular and Molecular Neuroscience Division, National Brain Research Centre, Manesar, Gurgaon, Haryana 122051, India.
Sanghamitra SenguptaDepartment of Biochemistry, University of Calcutta, Kolkata, West Bengal 700019, India.
Deepti JainRegional Centre for Biotechnology, NCR Biotech Science Cluster, Faridabad, Haryana 121001, India.
Mitali MukerjiGenomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology, New Delhi 110007, India.
Nandini Chatterjee SinghCellular and Molecular Neuroscience Division, National Brain Research Centre, Manesar, Gurgaon, Haryana 122051, India.
Subrata SinhaCellular and Molecular Neuroscience Division, National Brain Research Centre, Manesar, Gurgaon, Haryana 122051, India; Department of Biochemistry, All India Institute of Medical Sciences, New Delhi 110029, India. Electronic address: subrata.sinha@nbrc.ac.in.
National Brain Research Centre · INInstitute of Genomics and Integrative Biology · INRegional Centre for Biotechnology · INAcademy of Scientific and Innovative Research · INUniversity of Calcutta · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dyslexia is a heritable neurodevelopmental disorder characterized by difficulties in reading and writing. In this study, we describe the identification of a set of 17 polymorphisms located across 1.9Mb region on chromosome 5q31.3, encompassing genes of the PCDHG cluster, TAF7, PCDH1 and ARHGAP26, dominantly inherited with dyslexia in a multi-incident family. Strikingly, the non-risk form of seven variations of the PCDHG cluster, are preponderant in the human lineage, while risk alleles are ancestral and conserved across Neanderthals to non-human primates. Four of these seven ancestral variations (c.460A>C [p.Ile154Leu], c.541G>A [p.Ala181Thr], c.2036G>C [p.Arg679Pro] and c.2059A>G [p.Lys687Glu]) result in amino acid alterations. p.Ile154Leu and p.Ala181Thr are present at EC2: EC3 interacting interface of γA3-PCDH and γA4-PCDH respectively might affect trans-homophilic interaction and hence neuronal connectivity. p.Arg679Pro and p.Lys687Glu are present within the linker region connecting trans-membrane to extracellular domain. Sequence analysis indicated the importance of p.Ile154, p.Arg679 and p.Lys687 in maintaining class specificity. Thus the observed association of PCDHG genes encoding neural adhesion proteins reinforces the hypothesis of aberrant neuronal connectivity in the pathophysiology of dyslexia. Additionally, the striking conservation of the identified variants indicates a role of PCDHG in the evolution of highly specialized cognitive skills critical to reading.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationMultigene FamilyAllelesAmino Acid SequenceBasal GangliaBase SequenceCadherinsChromosome SegregationDyslexiaFamilyGenes, DominantHumansInheritance PatternsModels, MolecularPolymorphism, Single NucleotideCadherinsProtein IsoformsAncestral variationsDominant inheritanceDyslexiaNeanderthal genomeNeuronal connectionProtocadherin gammaTrans-homophilic interaction

Identifiers

PMID29409727
PMCPMC5835549
OpenAlexW2782844031

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.