Evidence map›Paper›PMID 29407373›Full record

ReviewVirology2018

Spumaretroviruses: Updated taxonomy and nomenclature.

Arifa S Khan, Jochen Bodem, Florence Buseyne, Antoine Gessain, Welkin Johnson, Jens H Kuhn, Jacek Kuzmak, Dirk Lindemann, Maxine L Linial, Martin Löchelt and 3 more

Erratum issuedOpen access · greenAbstract readReview
In one paragraph

Review in Virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 11 institutions in 5 countries.

Arifa S KhanLaboratory of Retroviruses, US Food and Drug Administration, Silver Spring, MD 20993, USA. Electronic address: arifa.khan@fda.hhs.gov.
Jochen BodemInstitut für Virologie und Immunbiologie, Universität Würzburg, Würzburg, Germany.
Florence BuseyneUnit of Epidemiology and Physiopathology of Oncogenic Viruses, Institut Pasteur, Paris, France; Centre National de la Recherche Scientifique, CNRS UMR3569, Paris, France.
Antoine GessainUnit of Epidemiology and Physiopathology of Oncogenic Viruses, Institut Pasteur, Paris, France; Centre National de la Recherche Scientifique, CNRS UMR3569, Paris, France.
Welkin JohnsonBiology Department, Boston College, Chestnut Hill, MA 02467, USA.
Jens H KuhnIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, MD 21702, USA.
Jacek KuzmakDepartment of Biochemistry, National Veterinary Research Institute, Puławy, Poland.
Dirk LindemannInstitute of Virology, Technische Universität Dresden, Dresden, Germany.
Maxine L LinialDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Martin LöcheltResearch Program Infection, Inflammation and Cancer, German Cancer Research Center (DFKZ), Heidelberg, Germany.
Magdalena Materniak-KornasDepartment of Biochemistry, National Veterinary Research Institute, Puławy, Poland.
Marcelo A SoaresInstituto Nacional de Câncer and Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
William M SwitzerLaboratory Branch, Division of HIV/AIDS Prevention, Centers for Disease Control and Prevention, Atlanta, GA 30329, USA.
Centre National de la Recherche Scientifique · FRNational Veterinary Research Institute · PLBoston College · USCenters for Disease Control and Prevention · USFred Hutch Cancer Center · USGerman Cancer Research Center · DENational Institutes of Health · USTechnische Universität Dresden · DEUnited States Food and Drug Administration · USUniversidade Federal do Rio de Janeiro · BRUniversity of Würzburg · DE

Funding

Intramural CDC HHS CC999999NIAID NIH HHS HHSN272200700016I
6 · The paper itself

Abstract

Spumaretroviruses, commonly referred to as foamy viruses, are complex retroviruses belonging to the subfamily Spumaretrovirinae, family Retroviridae, which naturally infect a variety of animals including nonhuman primates (NHPs). Additionally, cross-species transmissions of simian foamy viruses (SFVs) to humans have occurred following exposure to tissues of infected NHPs. Recent research has led to the identification of previously unknown exogenous foamy viruses, and to the discovery of endogenous spumaretrovirus sequences in a variety of host genomes. Here, we describe an updated spumaretrovirus taxonomy that has been recently accepted by the International Committee on Taxonomy of Viruses (ICTV) Executive Committee, and describe a virus nomenclature that is generally consistent with that used for other retroviruses, such as lentiviruses and deltaretroviruses. This taxonomy can be applied to distinguish different, but closely related, primate (e.g., human, ape, simian) foamy viruses as well as those from other hosts. This proposal accounts for host-virus co-speciation and cross-species transmission.

Indexed as

AnimalsHost SpecificityHumansPhylogenyPrimatesRetroviridae InfectionsSpumavirusFoamy virusICTVInternational Committee on Taxonomy of VirusesRetrovirusSpumaretrovirinaeSpumaretrovirusSpumavirusVirus classificationVirus nomenclatureVirus taxonomyZoonosis

Identifiers

PMID29407373
PMCPMC11318574
OpenAlexW2791174376

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.