Evidence map›Paper›PMID 29404866›Full record

ArticleEcotoxicology (London, England)2018

Differential expression of the PAL gene family in rice seedlings exposed to chromium by microarray analysis.

Xiao-Zhang Yu, Wei-Jia Fan, Yu-Juan Lin, Fei-Fei Zhang, Dharmendra K Gupta

Abstract read
PubMed Publisher
In one paragraph

Article in Ecotoxicology (London, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 33 citations in OpenAlex.

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  10. Salicylic Acid Biosynthesis in Plants.Frontiers in plant science · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Xiao-Zhang YuThe Guangxi Key Laboratory of Theory & Technology for Environmental Pollution Control, College of Environmental Science & Engineering, Guilin University of Technology, 541004, Guilin, People's Republic of China. yuxiaozhang@hotmail.com.
Wei-Jia FanThe Guangxi Key Laboratory of Theory & Technology for Environmental Pollution Control, College of Environmental Science & Engineering, Guilin University of Technology, 541004, Guilin, People's Republic of China.
Yu-Juan LinThe Guangxi Key Laboratory of Theory & Technology for Environmental Pollution Control, College of Environmental Science & Engineering, Guilin University of Technology, 541004, Guilin, People's Republic of China.
Fei-Fei ZhangThe Guangxi Key Laboratory of Theory & Technology for Environmental Pollution Control, College of Environmental Science & Engineering, Guilin University of Technology, 541004, Guilin, People's Republic of China.
Dharmendra K GuptaInstitut für Radioökologie und Strahlenschutz (IRS), Gottfried Wilhelm Leibniz Universität Hannover, Herrenhäuser Str. 2, 30419, Hannover, Germany.
Guilin University of Technology · CNLeibniz University Hannover · DE

Funding

National Natural Science Foundation of China 41971094
6 · The paper itself

Abstract

Phenylalanine ammonia-lyase (PAL) is one of the principle enzymes involved in plant's secondary metabolism. Expression of individual isogene from the PAL gene family is variable with species of plants in responses to different stresses. In this study, transcriptome analysis of the PAL gene family in rice seedlings exposed to potassium chromate Cr(VI) or chromium nitrate Cr(III) was conducted using Agilent 44K rice microarray and real-time quantitative RT-PCR. Uptake and accumulation of both Cr species by rice seedlings and their effect on PAL activity were also determined. Three days of Cr exposure led to significant accumulation of Cr in plant tissues, but majority being in roots rather than shoots. Changes of PAL activities in rice tissues were evident from both Cr treatments. Individual isogene from the rice PAL gene family was expressed differentially in response to both Cr variants. Comparing gene expression between two Cr treatments, only osPAL2 and osPAL4 genes were expressed in similar patterns. Also, gene expression pattern was inconsistent in both plant tissues. Results indicated that expression of individual isoform from the rice PAL gene family is tissue, and stimulus specific under different Cr exposure, suggesting their different detoxification strategies for decreasing or eliminating Cr stresses.

Indexed as

Gene Expression Regulation, PlantChromatesChromium CompoundsIsoenzymesNitratesOligonucleotide Array Sequence AnalysisOryzaPhenylalanine Ammonia-LyasePlant ProteinsPlant RootsPolymerase Chain ReactionPotassium CompoundsSeedlingsSoil PollutantsChromatesChromium Compoundschromium nitrateIsoenzymesNitratesPhenylalanine Ammonia-LyasePlant Proteinspotassium chromate(VI)Potassium CompoundsSoil PollutantsChromiumMicroarrayPhenylalanine ammonia-lyaseRice

Identifiers

PMID29404866
OpenAlexW2789950181

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.