Evidence map›Paper›PMID 29404466›Full record

ReviewHepatology communications2017

Sequencing of hepatitis C virus for detection of resistance to direct-acting antiviral therapy: A systematic review.

Sofia R Bartlett, Jason Grebely, Auda A Eltahla, Jacqueline D Reeves, Anita Y M Howe, Veronica Miller, Francesca Ceccherini-Silberstein, Rowena A Bull, Mark W Douglas, Gregory J Dore and 11 more

Open access · goldAbstract readReview
In one paragraph

Review in Hepatology communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Evaluation of the results of MOTAKK hepatitis C virus RNA genotyping and hepatitis delta virus external quality assessment programs during 2015-2016.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2019
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Observational
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 13 institutions in 8 countries.

Sofia R BartlettKirby Institute University of New South Wales Sydney Australia.
Jason GrebelyKirby Institute University of New South Wales Sydney Australia.
Auda A EltahlaKirby Institute University of New South Wales Sydney Australia.
Jacqueline D ReevesMonogram Biosciences, Laboratory Corporation of America Holdings South San Francisco CA.
Anita Y M HoweBritish Columbia Centre for Excellence in HIV/AIDS, St Paul's Hospital Vancouver Canada.
Veronica MillerForum for Collaborative HIV Research University of California Berkeley Washington DC.
Francesca Ceccherini-SilbersteinDepartment of Experimental Medicine and Surgery University of Rome Tor Vergata Rome Italy.
Rowena A BullKirby Institute University of New South Wales Sydney Australia.
Mark W DouglasStorr Liver Centre, The Westmead Institute for Medical Research University of Sydney Sydney Australia.
Gregory J DoreKirby Institute University of New South Wales Sydney Australia.
Patrick HarringtonU.S. Food and Drug Administration, Center for Drug Evaluation and Research, Division of Antiviral Products Silver Spring MD.
Andrew R LloydKirby Institute University of New South Wales Sydney Australia.
Brendan JackaKirby Institute University of New South Wales Sydney Australia.
Gail V MatthewsKirby Institute University of New South Wales Sydney Australia.
Gary P WangDepartment of Medicine University of Florida College of Medicine Gainesville FL.
Jean-Michel PawlotskyNational Reference Center for Viral Hepatitis B, C, and D, Department of Virology and INSERM U955, Hopital Henri Mondor Université Paris-Est Creteil France.
Jordan J FeldToronto Western Hospital Liver Centre, University Health Network University of Toronto Toronto Canada.ORCID 0000-0003-2640-2211
Janke SchinkelDepartment of Medical Microbiology Academic Medical Center Amsterdam the Netherlands.
Federico GarciaClinical Microbiology Service Complejo Hospitalario Universitario de Granada Granada Spain.ORCID 0000-0001-7611-781X
Johan LennerstrandSection of Clinical Virology, Department of Medical Science Uppsala University Uppsala Sweden.
Tanya L ApplegateKirby Institute University of New South Wales Sydney Australia.
UNSW Sydney · AUAmsterdam UMC Location University of Amsterdam · NLComplejo Hospitalario Universitario de Granada · ESInserm · FRLabCorp (United States) · USSt. Paul's Hospital · CAThe University of Sydney · AUUnited States Food and Drug Administration · USUniversity Health Network · CAUniversity of California, Berkeley · USUniversity of Florida · USUniversity of Rome Tor Vergata · ITUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The significance of the clinical impact of direct-acting antiviral (DAA) resistance-associated substitutions (RASs) in hepatitis C virus (HCV) on treatment failure is unclear. No standardized methods or guidelines for detection of DAA RASs in HCV exist. To facilitate further evaluations of the impact of DAA RASs in HCV, we conducted a systematic review of RAS sequencing protocols, compiled a comprehensive public library of sequencing primers, and provided expert guidance on the most appropriate methods to screen and identify RASs. The development of standardized RAS sequencing protocols is complicated due to a high genetic variability and the need for genotype- and subtype-specific protocols for multiple regions. We have identified several limitations of the available methods and have highlighted areas requiring further research and development. The development, validation, and sharing of standardized methods for all genotypes and subtypes should be a priority. (

Identifiers

PMID29404466
PMCPMC5721421
OpenAlexW2617851912

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.