Evidence map›Paper›PMID 29403001›Full record

ArticleScientific reports2018

Effect of Melatonin on the stability and expression of reference genes in Catharanthus roseus.

S A Sheshadri, M J Nishanth, V Yamine, Bindu Simon

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Transcriptome analysis ofFrontiers in plant science · 2025
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Exogenous melatonin trigger biomass accumulation and production of stress enzymes during callogenesis in medicinally importantPhysiology and molecular biology of plants : an international journal of functional plant biology · 2018
    Article
  10. Melatonin and Its Effects on Plant Systems.Molecules (Basel, Switzerland) · 2018
    Review
  11. Melatonin Treatment Inhibits the Growth ofFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

S A SheshadriPhytoengineering Lab, School of Chemical and Biotechnology, SASTRA University, Thanjavur, India.
M J NishanthPhytoengineering Lab, School of Chemical and Biotechnology, SASTRA University, Thanjavur, India.
V YaminePhytoengineering Lab, School of Chemical and Biotechnology, SASTRA University, Thanjavur, India.
Bindu SimonPhytoengineering Lab, School of Chemical and Biotechnology, SASTRA University, Thanjavur, India. bindusimon@scbt.sastra.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of Melatonin in influencing diverse genes in plants has gained momentum in recent years and many reports have employed qRT-PCR for their quantification. Relative quantification of gene expression relies on accurate normalization of qRT-PCR data against a stably-expressing internal reference-gene. Although researchers have been using commonly available reference-genes to assess Melatonin-induced gene expression, but to-date, there have been no attempts to validate the reference-gene stability under Melatonin-supplementation in planta. In this study, we performed stability assessment of common reference-genes under Melatonin-supplementation and abiotic stress in leaves and seedlings of Catharanthus roseus using geNorm, NormFinder, BestKeeper, ΔCt and RefFinder algorithms. Nine candidate reference-genes were tested for stability in C. roseus (FBOX, CACS, TIP, RSP9, EXP, EXPR, SAND, F17M5, ACT) and our study inferred that while EXP and EXPR were the most-stable, F17M5 was the lowest-stable gene in the leaf-fed samples. Among seedlings of C. roseus, F17M5 and TIP were the most, while ACT was the least-stable gene. The suitability of selected stable reference-gene pairs was demonstrated by assessing the transcript levels of the Melatonin-biosynthesis gene SNAT under same conditions. Our study is the first to comprehensively analyze the stability of commonly-used reference-genes under Melatonin-induced conditions in C. roseus.

Indexed as

AntioxidantsCatharanthusGene Expression ProfilingGene Expression Regulation, PlantMelatoninPlant LeavesPlant ProteinsReference StandardsSeedlingsAntioxidantsMelatoninPlant Proteins

Identifiers

PMID29403001
PMCPMC5799177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.