Evidence map›Paper›PMID 29401479›Full record

ArticlePloS one2018

Detection of Zika virus using reverse-transcription LAMP coupled with reverse dot blot analysis in saliva.

Maite Sabalza, Rubina Yasmin, Cheryl A Barber, Talita Castro, Daniel Malamud, Beum Jun Kim, Hui Zhu, Richard A Montagna, William R Abrams

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
9.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

  1. A need to raise the bar - A systematic review of temporal trends in diagnostics for Japanese encephalitis virus infection, and perspectives for future research.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
    Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Diagnostic Salivary Tests for SARS-CoV-2.Journal of dental research · 2021
    Article
  12. Microfluidic devices for detection of RNA viruses.Reviews in medical virology · 2021
    Review
  13. Article
  14. Review
  15. Pathogenic viruses: Molecular detection and characterization.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Review
  16. Review
  17. Review-Chemical and Biological Sensors for Viral Detection.Journal of the Electrochemical Society · 2020
    Article
  18. Recent Developments in Nanotechnology for Detection and Control ofFrontiers in bioengineering and biotechnology · 2020
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Maite SabalzaDepartment of Basic Sciences, New York University College of Dentistry, New York, New York, United States of America.ORCID 0000-0002-5669-8749
Rubina YasminRheonix, Inc., Ithaca, New York, United States of America.
Cheryl A BarberDepartment of Basic Sciences, New York University College of Dentistry, New York, New York, United States of America.
Talita CastroDepartment of Basic Sciences, New York University College of Dentistry, New York, New York, United States of America.
Daniel MalamudDepartment of Basic Sciences, New York University College of Dentistry, New York, New York, United States of America.
Beum Jun KimRheonix, Inc., Ithaca, New York, United States of America.
Hui ZhuRheonix, Inc., Ithaca, New York, United States of America.
Richard A MontagnaRheonix, Inc., Ithaca, New York, United States of America.
William R AbramsDepartment of Basic Sciences, New York University College of Dentistry, New York, New York, United States of America.
New York University · USRheonix (United States) · USUniversidade de São Paulo · BR

Funding

Point-of-care Detection of HIV Antibodies and RNA in Blood and SalivaR44DE024456 · NIDCR · RHEONIX, INC. · PI MONTAGNA, RICHARD A. · 2014 to 2016
$2.3M
NIDCR NIH HHS R44 DE024456NIH HHS 3R44DE024456-03S1NIH HHS R44DE024456
6 · The paper itself

Abstract

In recent years, there have been increasing numbers of infectious disease outbreaks that spread rapidly to population centers resulting from global travel, population vulnerabilities, environmental factors, and ecological disasters such as floods and earthquakes. Some examples of the recent outbreaks are the Ebola epidemic in West Africa, Middle East respiratory syndrome coronavirus (MERS-Co) in the Middle East, and the Zika outbreak through the Americas. We have created a generic protocol for detection of pathogen RNA and/or DNA using loop-mediated isothermal amplification (LAMP) and reverse dot-blot for detection (RDB) and processed automatically in a microfluidic device. In particular, we describe how a microfluidic assay to detect HIV viral RNA was converted to detect Zika virus (ZIKV) RNA. We first optimized the RT-LAMP assay to detect ZIKV RNA using a benchtop isothermal amplification device. Then we implemented the assay in a microfluidic device that will allow analyzing 24 samples simultaneously and automatically from sample introduction to detection by RDB technique. Preliminary data using saliva samples spiked with ZIKV showed that our diagnostic system detects ZIKV RNA in saliva. These results will be validated in further experiments with well-characterized ZIKV human specimens of saliva. The described strategy and methodology to convert the HIV diagnostic assay and platform to a ZIKV RNA detection assay provides a model that can be readily utilized for detection of the next emerging or re-emerging infectious disease.

Indexed as

Reverse TranscriptionHumansNucleic Acid Amplification TechniquesRNA, ViralSalivaZika VirusRNA, Viral

Identifiers

PMID29401479
PMCPMC5798782
OpenAlexW2793852491

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.