Evidence map›Paper›PMID 29401292›Full record

ArticlePlant & cell physiology2018

Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis.

Taro Kimura, Ken Haga, Yasushi Shimizu-Mitao, Yumiko Takebayashi, Hiroyuki Kasahara, Ken-Ichiro Hayashi, Tatsuo Kakimoto, Tatsuya Sakai

Erratum issuedOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Plant & cell physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Modeling Auxin Signaling in Roots: Auxin Computations.Cold Spring Harbor perspectives in biology · 2022
    Review
  7. Review
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Taro KimuraGraduate School of Science and Technology, Niigata University, 8050 Ikarashi 2-no-cho, Nishi-ku, Niigata, 950-2181 Japan.
Ken HagaDepartment of Human Science and Common Education, Nippon Institute of Technology, 4-1 Gakuendai, Miyashiro-cho, Minamisaitama-gun, Saitama, 345-8501 Japan.
Yasushi Shimizu-MitaoDepartment of Biological Science, Graduate School of Science, Osaka University, 1-4 Machikaneyama-cho, Toyonaka, Osaka, 560-0043 Japan.
Yumiko TakebayashiRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045 Japan.
Hiroyuki KasaharaRIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045 Japan.
Ken-Ichiro HayashiDepartment of Biochemistry, Okayama University of Science, 1-1 Ridaicho, Kita-ku, Okayama, 700-0005 Japan.
Tatsuo KakimotoDepartment of Biological Science, Graduate School of Science, Osaka University, 1-4 Machikaneyama-cho, Toyonaka, Osaka, 560-0043 Japan.
Tatsuya SakaiGraduate School of Science and Technology, Niigata University, 8050 Ikarashi 2-no-cho, Nishi-ku, Niigata, 950-2181 Japan.
Niigata University · JPOsaka University · JPNippon Institute of Technology · JPOkayama University of Science · JPRIKEN Center for Sustainable Resource Science · JPTokyo University of Agriculture and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An asymmetric auxin distribution pattern is assumed to underlie the tropic responses of seed plants. It is unclear, however, whether this pattern is required for root negative phototropism. We here demonstrate that asymmetric auxin distribution is not required to establish root phototropism in Arabidopsis. Our detailed analyses of auxin reporter genes indicate that auxin accumulates on the irradiated side of roots in response to an incidental gravitropic stimulus caused by phototropic bending. Further, an agravitropic mutant showed a suppression of this accumulation with an enhancement of the phototropic response. In this context, our pharmacological and genetic analyses revealed that both polar auxin transport and auxin biosynthesis are critical for the establishment of root gravitropism, but not for root phototropism, and that defects in these processes actually enhance phototropic responses in roots. The auxin response factor double mutant arf7 arf19 and the auxin receptor mutant tir1 showed a slight reduction in phototropic curvatures in roots, suggesting that the transcriptional regulation by some specific ARF proteins and their regulators is at least partly involved in root phototropism. However, the auxin antagonist PEO-IAA [α-(phenylethyl-2-one)-indole-3-acetic acid] suppressed root gravitropism and enhanced root phototropism, suggesting that the TIR1/AFB auxin receptors and ARF transcriptional factors play minor roles in root phototropism. Taken together, we conclude from our current data that the phototropic response in Arabidopsis roots is induced by an unknown mechanism that does not require asymmetric auxin distribution and that the Cholodny-Went hypothesis probably does not apply to root phototropism.

Indexed as

PhototropismArabidopsisArabidopsis ProteinsBiosynthetic PathwaysGreen Fluorescent ProteinsIndoleacetic AcidsMembrane Transport ProteinsMutationPlant RootsPlants, Genetically ModifiedTranscription FactorsArabidopsis ProteinsGreen Fluorescent ProteinsIndoleacetic AcidsMembrane Transport ProteinsTranscription Factors

Identifiers

PMID29401292
OpenAlexW2791160576

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.