Evidence map›Paper›PMID 29400649›Full record

ArticleeLife2018

TRAIN (Transcription of Repeats Activates INterferon) in response to chromatin destabilization induced by small molecules in mammalian cells.

Katerina Leonova, Alfiya Safina, Elimelech Nesher, Poorva Sandlesh, Rachel Pratt, Catherine Burkhart, Brittany Lipchick, Ilya Gitlin, Costakis Frangou, Igor Koman and 5 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

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  10. Updates inBiomedicines · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Katerina LeonovaDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Alfiya SafinaDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Elimelech NesherDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.ORCID http://orcid.org/0000-0002-8326-5535
Poorva SandleshDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Rachel PrattDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Catherine BurkhartBuffalo BioLabs, Buffalo, United States.
Brittany LipchickDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Ilya GitlinDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Costakis FrangouDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Igor KomanDepartment of Molecular Biology, Ariel University, Ariel, Israel.
Jianmin WangDepartment of Bioinformatics, Roswell Park Cancer Institute, Buffalo, United States.
Kirill KirsanovDepartment of Chemical Carcinogenesis, Institute of Carcinogenesis, Blokhin Cancer Research Center RAMS, Moscow, Russia.
Marianna G YakubovskayaDepartment of Chemical Carcinogenesis, Institute of Carcinogenesis, Blokhin Cancer Research Center RAMS, Moscow, Russia.
Andrei V GudkovDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.
Katerina GurovaDepartment of Cell Stress Biology, Roswell Park Cancer Institute, Buffalo, United States.ORCID http://orcid.org/0000-0001-9189-0712
Roswell Park Comprehensive Cancer Center · USAriel University · ILBuffalo BioLabs · US

Funding

Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
Modulation of cancer specific transcriptional factors with small moleculesR01CA197967 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI GUROVA, KATERINA V · 2015 to 2019
$2.0M
Safety and anti-cancer efficacy of FACT inactivation in miceR21CA198395 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI GUROVA, KATERINA V · 2015 to 2016
$420k
NCI NIH HHS P30 CA016056NCI NIH HHS P30CA016056NCI NIH HHS R01 CA197967NCI NIH HHS R21 CA198395NCI NIH HHS R21CA198395NCI NIH HHS RO1CA197967
6 · The paper itself

Abstract

Cellular responses to the loss of genomic stability are well-established, while how mammalian cells respond to chromatin destabilization is largely unknown. We previously found that DNA demethylation on p53-deficient background leads to transcription of repetitive heterochromatin elements, followed by an interferon response, a phenomenon we named TRAIN (Transcription of Repeats Activates INterferon). Here, we report that curaxin, an anticancer small molecule, destabilizing nucleosomes via disruption of histone/DNA interactions, also induces TRAIN. Furthermore, curaxin inhibits oncogene-induced transformation and tumor growth in mice in an interferon-dependent manner, suggesting that anticancer activity of curaxin, previously attributed to p53-activation and NF-kappaB-inhibition, may also involve induction of interferon response to epigenetic derepression of the cellular 'repeatome'. Moreover, we observed that another type of drugs decondensing chromatin, HDAC inhibitor, also induces TRAIN. Thus, we proposed that TRAIN may be one of the mechanisms ensuring epigenetic integrity of mammalian cells via elimination of cells with desilenced chromatin.

Indexed as

DNA MethylationGenomic InstabilityTranscription, GeneticAnimalsAntineoplastic AgentsCells, CulturedChromatinHistone Deacetylase InhibitorsHumansInterferonsMiceAntineoplastic AgentsChromatinHistone Deacetylase InhibitorsInterferonsCBL0137cell biologychromatincuraxinhumaninterferonsmousenucleosomeTRAIN

Identifiers

PMID29400649
PMCPMC5815852
OpenAlexW2785478029

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.