Evidence map›Paper›PMID 29397729›Full record

ArticleThe journal of physical chemistry letters2018

How Detergent Impacts Membrane Proteins: Atomic-Level Views of Mitochondrial Carriers in Dodecylphosphocholine.

Vilius Kurauskas, Audrey Hessel, Peixiang Ma, Paola Lunetti, Katharina Weinhäupl, Lionel Imbert, Bernhard Brutscher, Martin S King, Rémy Sounier, Vincenza Dolce and 6 more

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry letters, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  7. Article
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  9. Molecular Dynamics Simulations of Mitochondrial Uncoupling Protein 2.International journal of molecular sciences · 2021
    Article
  10. Review
  11. International journal of molecular sciences · 2020
    Review
  12. Article
  13. Towards the Native Binding Modes of Antibiotics that Target Lipid II.Chembiochem : a European journal of chemical biology · 2019
    Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 4 countries.

Vilius KurauskasUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.
Audrey HesselUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.
Peixiang MaUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.
Paola LunettiDepartment of Biological and Environmental Sciences and Technologies, University of Salento , 73100 Lecce, Italy.
Katharina WeinhäuplUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.
Lionel ImbertUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.
Bernhard BrutscherUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.ORCID http://orcid.org/0000-0001-7652-7384
Martin S KingMRC-MBU, University of Cambridge , Cambridge CB2 0XY, United Kingdom.
Rémy SounierCNRS, INSERM, Université de Montpellier , 34094 Montpellier, France.
Vincenza DolceDept of Pharmacy, University of Calabria , 87036 Arcavacata di Rende, Italy.
Edmund R S KunjiMRC-MBU, University of Cambridge , Cambridge CB2 0XY, United Kingdom.
Loredana CapobiancoDepartment of Biological and Environmental Sciences and Technologies, University of Salento , 73100 Lecce, Italy.
Christophe ChipotLPCT, UMR 7019 Université de Lorraine, CNRS and Laboratoire International Associé & University of Illinois at Urbana-Champaign , F-54500 Vandoeuvre-lès-Nancy, France.ORCID http://orcid.org/0000-0002-9122-1698
François DehezLPCT, UMR 7019 Université de Lorraine, CNRS and Laboratoire International Associé & University of Illinois at Urbana-Champaign , F-54500 Vandoeuvre-lès-Nancy, France.
Beate BerschUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.
Paul SchandaUniversité Grenoble Alpes, CNRS, CEA, IBS , 38000 Grenoble, France.ORCID http://orcid.org/0000-0002-9350-7606
Centre National de la Recherche Scientifique · FRUniversity of Cambridge · GBUniversity of Salento · ITUniversity of Calabria · IT

Funding

European Research Council 311318Medical Research Council MC_U105663139Medical Research Council MC_UU_00015/1Medical Research Council MC_UU_00015/7
6 · The paper itself

Abstract

Characterizing the structure of membrane proteins (MPs) generally requires extraction from their native environment, most commonly with detergents. Yet, the physicochemical properties of detergent micelles and lipid bilayers differ markedly and could alter the structural organization of MPs, albeit without general rules. Dodecylphosphocholine (DPC) is the most widely used detergent for MP structure determination by NMR, but the physiological relevance of several prominent structures has been questioned, though indirectly, by other biophysical techniques, e.g., functional/thermostability assay (TSA) and molecular dynamics (MD) simulations. Here, we resolve unambiguously this controversy by probing the functional relevance of three different mitochondrial carriers (MCs) in DPC at the atomic level, using an exhaustive set of solution-NMR experiments, complemented by functional/TSA and MD data. Our results provide atomic-level insight into the structure, substrate interaction and dynamics of the detergent-membrane protein complexes and demonstrates cogently that, while high-resolution NMR signals can be obtained for MCs in DPC, they systematically correspond to nonfunctional states.

Indexed as

MicellesDetergentsMitochondrial ADP, ATP TranslocasesMitochondrial Membrane Transport ProteinsMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularPhosphorylcholineProtein ConformationProtein StabilitySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAac3 protein, S cerevisiaeDetergentsdodecylphosphocholineMicellesMitochondrial ADP, ATP TranslocasesMitochondrial Membrane Transport ProteinsPhosphorylcholineSaccharomyces cerevisiae Proteins

Identifiers

PMID29397729
PMCPMC5834942
OpenAlexW2786802596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.