Evidence map›Paper›PMID 29397556›Full record

ArticleMolecular neurobiology2018

Whole-Transcriptome Analysis of Mouse Models with MPTP-Induced Early Stages of Parkinson's Disease Reveals Stage-Specific Response of Transcriptome and a Possible Role of Myelin-Linked Genes in Neurodegeneration.

A Kh Alieva, V S Zyrin, M M Rudenok, A A Kolacheva, M V Shulskaya, M V Ugryumov, P A Slominsky, M I Shadrina

Abstract read
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Article in Molecular neurobiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Development of an extended half-life GM-CSF fusion protein for Parkinson's disease.Journal of controlled release : official journal of the Controlled Release Society · 2022
    Article
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  8. Article
  9. Article
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  11. Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

A Kh AlievaInstitute of Molecular Genetics, Russian Academy of Sciences, pl. Kurchatova, 2, Moscow, Russia, 123182. anelja.a@gmail.com.
V S ZyrinInstitute of Molecular Genetics, Russian Academy of Sciences, pl. Kurchatova, 2, Moscow, Russia, 123182.
M M RudenokInstitute of Molecular Genetics, Russian Academy of Sciences, pl. Kurchatova, 2, Moscow, Russia, 123182.
A A KolachevaKoltzov Institute of Developmental Biology, Russian Academy of Sciences, ul. Vavilova, 26, Moscow, Russia, 119334.
M V ShulskayaInstitute of Molecular Genetics, Russian Academy of Sciences, pl. Kurchatova, 2, Moscow, Russia, 123182.
M V UgryumovKoltzov Institute of Developmental Biology, Russian Academy of Sciences, ul. Vavilova, 26, Moscow, Russia, 119334.
P A SlominskyInstitute of Molecular Genetics, Russian Academy of Sciences, pl. Kurchatova, 2, Moscow, Russia, 123182.
M I ShadrinaInstitute of Molecular Genetics, Russian Academy of Sciences, pl. Kurchatova, 2, Moscow, Russia, 123182.
Russian Academy of Sciences · RUKoltzov Institute of Developmental Biology · RUKurchatov Institute · RUInstitute of Molecular Genetics · RU

Funding

Russian Science Foundation 16-15-00238Russian Science Foundation 17-75-10119
6 · The paper itself

Abstract

Parkinson's disease (PD) is characterized by degeneration of dopaminergic neurons. A whole-transcriptome analysis of the substantia nigra and striatum of an MPTP-induced mouse models of the earliest stages of PD was performed. Functional clustering of differentially represented transcripts revealed processes associated with the functioning of synapses, dendrites, axons, and myelination of neuronal projections. All of these processes occur in both the substantia nigra and striatum, but they are aimed at the functioning of neuron terminals in the striatum. One cluster was identified at the earliest stage modeled, i.e., "neuron projection" in the substantia nigra and "transport" in the striatum, and their number increased at subsequent stages. The number of clusters in the striatum predominates over those in the substantia nigra and there is a pronounced increase in the number of clusters from the modeled early stages to the late stages. These findings indicate that the substantia nigra and striatum have unique patterns of changes at each stage. Considering the clustering of individual processes, it was seen that there is a set of hierarchical clusters that overlap only partially at different stages and in different tissues. The data indicate a consistent involvement of the transcriptome in the pathogenesis of PD and highlight the independent role of various brain structures and individual parts of nerve cells in the formation of a response to the development of neurodegeneration. Decreased myelination of neuronal projections may be associated with the development of PD in the models considered.

Indexed as

Gene Expression Profiling1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridineAnimalsCluster AnalysisDisease Models, AnimalExosomesMaleMice, Inbred C57BLMitochondriaMyelin SheathNerve DegenerationParkinson DiseaseRNA, MessengerTranscriptome1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridineRNA, MessengerDopamineMitochondriaMPTPMyelinParkinson’s diseaseTranscriptome

Identifiers

PMID29397556
OpenAlexW2786767756

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.