Evidence map›Paper›PMID 29396913›Full record

ArticleMolecular microbiology2018

DNA gyrase activity regulates DnaA-dependent replication initiation in Bacillus subtilis.

A N Samadpour, H Merrikh

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

A N SamadpourDepartment of Microbiology, University of Washington, Seattle, WA, USA.
H MerrikhDepartment of Microbiology, University of Washington, Seattle, WA, USA.ORCID 0000-0001-9956-9640
University of Washington · US

Funding

Targeted Gene Evolution via Replication-Transcription ConflictsDP2GM110773 · NIGMS · UNIVERSITY OF WASHINGTON · PI MERRIKH, HOURA · 2013 to 2013
$2.2M
NIGMS NIH HHS DP2 GM110773
6 · The paper itself

Abstract

In bacteria, initiation of DNA replication requires the DnaA protein. Regulation of DnaA association and activity at the origin of replication, oriC, is the predominant mechanism of replication initiation control. One key feature known to be generally important for replication is DNA topology. Although there have been some suggestions that topology may impact replication initiation, whether this mechanism regulates DnaA-mediated replication initiation is unclear. We found that the essential topoisomerase, DNA gyrase, is required for both proper binding of DnaA to oriC as well as control of initiation frequency in Bacillus subtilis. Furthermore, we found that the regulatory activity of gyrase in initiation is specific to DnaA and oriC. Cells initiating replication from a DnaA-independent origin, oriN, are largely resistant to gyrase inhibition by novobiocin, even at concentrations that compromise survival by up to four orders of magnitude in oriC cells. Furthermore, inhibition of gyrase does not impact initiation frequency in oriN cells. Additionally, deletion or overexpression of the DnaA regulator, YabA, significantly modulates sensitivity to gyrase inhibition, but only in oriC and not oriN cells. We propose that gyrase is a negative regulator of DnaA-dependent replication initiation from oriC, and that this regulatory mechanism is required for cell survival.

Indexed as

DNA ReplicationBacillus subtilisBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA GyraseGene Expression Regulation, BacterialReplication OriginBacterial ProteinsDnaA protein, BacteriaDNA, BacterialDNA-Binding ProteinsDNA Gyrase

Identifiers

PMID29396913
PMCPMC5893406
OpenAlexW2913558229

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.