Evidence map›Paper›PMID 29396601›Full record

ArticleCurrent genetics2018

Rad5 coordinates translesion DNA synthesis pathway by recognizing specific DNA structures in saccharomyces cerevisiae.

Qifu Fan, Xin Xu, Xi Zhao, Qian Wang, Wei Xiao, Ying Guo, Yu V Fu

Abstract read
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In one paragraph

Article in Current genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Making Choices: DNA Replication Fork Recovery Mechanisms.Seminars in cell & developmental biology · 2021
    Review
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Lsm12 Mediates Deubiquitination of DNA Polymerase η To HelpApplied and environmental microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qifu FanState Key Laboratory of Microbial Resources, Institution of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Xin XuState Key Laboratory of Microbial Resources, Institution of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Xi ZhaoState Key Laboratory of Microbial Resources, Institution of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Qian WangCollege of Life Sciences, Capital Normal University, Beijing, 100048, China.
Wei XiaoCollege of Life Sciences, Capital Normal University, Beijing, 100048, China.
Ying GuoState Key Laboratory of Microbial Resources, Institution of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
Yu V FuState Key Laboratory of Microbial Resources, Institution of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China. fuyu@im.ac.cn.ORCID http://orcid.org/0000-0001-8251-2306

Funding

National Natural Science Foundation of China 31371264National Natural Science Foundation of China 31670068
6 · The paper itself

Abstract

DNA repair is essential to maintain genome integrity. In addition to various DNA repair pathways dealing with specific types of DNA lesions, DNA damage tolerance (DDT) promotes the bypass of DNA replication blocks encountered by the replication fork to prevent cell death. Budding yeast Rad5 plays an essential role in the DDT pathway and its structure indicates that Rad5 recognizes damaged DNA or stalled replication forks, suggesting that Rad5 plays an important role in the DDT pathway choice. It has been reported that Rad5 forms subnuclear foci in the presence of methyl methanesulfonate (MMS) during the S phase. By analyzing the formation of Rad5 foci after MMS treatment, we showed that some specific DNA structures rather than mono-ubiquitination of proliferating cell nuclear antigen are required for the recruitment of Rad5 to the damaged site. Moreover, inactivation of the base excision repair (BER) pathway greatly decreased the Rad5 focus formation, suggesting that Rad5 recognizes specific DNA structures generated by BER. We also identified a negative role of overexpressed translesion synthesis polymerase Polη in the formation of Rad5 foci. Based on these data, we propose a modified DDT pathway model in which Rad5 plays a role in activating the DDT pathway.

Indexed as

DNA DamageDNA-Directed DNA PolymeraseDNA, FungalDNA HelicasesDNA RepairDNA ReplicationMethyl MethanesulfonateNucleic Acid ConformationProliferating Cell Nuclear AntigenSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionUbiquitinationDNA-Directed DNA PolymeraseDNA, FungalDNA HelicasesMethyl MethanesulfonateProliferating Cell Nuclear AntigenRAD5 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsBase excision repairDNA damage tolerancePolηRad5

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.