Evidence map›Paper›PMID 29396495›Full record

ArticleScientific reports2018

Structure-guided design of Serratia marcescens short-chain dehydrogenase/reductase for stereoselective synthesis of (R)-phenylephrine.

Jai-Shin Liu, Yi-Chia Kuan, Yu Tsou, Tung-Yueh Lin, Wen-Hwei Hsu, Ming-Te Yang, Jong-Yih Lin, Wen-Ching Wang

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Patulin Detoxification by Evolutionarily Divergent Reductases ofJournal of agricultural and food chemistry · 2025
    Article
  3. Article
  4. Crystal structures of FolM alternative dihydrofolate reductase 1 from Brucella suis and Brucella canis.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jai-Shin LiuInstitute of Molecular and Cellular Biology & Department of Life Science, National Tsing Hua University, Hsinchu, 300, Taiwan.
Yi-Chia KuanInstitute of Molecular and Cellular Biology & Department of Life Science, National Tsing Hua University, Hsinchu, 300, Taiwan.
Yu TsouInstitute of Molecular and Cellular Biology & Department of Life Science, National Tsing Hua University, Hsinchu, 300, Taiwan.
Tung-Yueh LinInstitute of Molecular and Cellular Biology & Department of Life Science, National Tsing Hua University, Hsinchu, 300, Taiwan.
Wen-Hwei HsuInstitute of Molecular Biology, National Chung Hsing University, Taichung, 402, Taiwan.
Ming-Te YangInstitute of Molecular Biology, National Chung Hsing University, Taichung, 402, Taiwan.
Jong-Yih LinDepartment of Mechanical Engineering, National Chung Hsing University, Taichung, 402, Taiwan.
Wen-Ching WangInstitute of Molecular and Cellular Biology & Department of Life Science, National Tsing Hua University, Hsinchu, 300, Taiwan. wcwang@life.nthu.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bioconversion is useful to produce optically pure enantiomers in the pharmaceutical industry, thereby avoiding problems with side reactions during organic synthesis processes. A short-chain dehydrogenase/reductase from Serratia marcescens BCRC 10948 (SmSDR) can stereoselectively convert 1-(3-hydroxyphenyl)-2-(methylamino) ethanone (HPMAE) into (R)-phenylephrine [(R)-PE], which is marketed medically as a nasal decongestant agent. The whole-cell conversion process for the synthesis of (R)-PE using SmSDR was reported to have an unexpectedly low conversion rate. We reported the crystal structure of the SmSDR and designed profitable variants to improve the enzymatic activity by structure-guided approach. Several important residues in the structure were observed to form hydrophobic clusters that stabilize the mobile loops surrounding the pocket. Of these, Phe98 and Phe202 face toward each other and connect the upper curvature from the two arms (i.e., the α7 helix and loopβ4-α4). The mutant structure of the double substitutions (F98YF202Y) exhibited a hydrogen bond between the curvatures that stabilizes the flexible arms. Site-directed mutagenesis characterization revealed that the mutations (F98Y, F98YF202Y, and F98YF202L) of the flexible loops that stabilize the region exhibited a higher transformation activity toward HPMAE. Together, our results suggest a robust structure-guided approach that can be used to generate a valuable engineered variant for pharmaceutical applications.

Indexed as

BiotransformationCrystallography, X-RayDNA Mutational AnalysisMetabolic EngineeringModels, MolecularPhenylephrineProtein ConformationSerratia marcescensShort Chain Dehydrogenase-ReductasesSympathomimeticsPhenylephrineShort Chain Dehydrogenase-ReductasesSympathomimetics

Identifiers

PMID29396495
PMCPMC5797133

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.