Evidence map›Paper›PMID 29396465›Full record

ArticleScientific reports2018

The rolB plant oncogene affects multiple signaling protein modules related to hormone signaling and plant defense.

Victor P Bulgakov, Yulia V Vereshchagina, Dmitry V Bulgakov, Galina N Veremeichik, Yuri N Shkryl

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. International journal of molecular sciences · 2025
    Article
  2. Article
  3. Review
  4. Metabolic engineering of hairy root cultures inFrontiers in bioengineering and biotechnology · 2024
    Article
  5. Article
  6. Proteome-Level Investigation ofInternational journal of molecular sciences · 2023
    Article
  7. Suppression of theLife (Basel, Switzerland) · 2023
    Article
  8. Proteomic Analysis of Proteins Related to Defense Responses inInternational journal of molecular sciences · 2023
    Article
  9. RhizogenicProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. TransgenicFrontiers in plant science · 2021
    Article
  15. Review
  16. Frontiers in plant science · 2019
    Article
  17. Influence of different3 Biotech · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Victor P BulgakovInstitute of Biology and Soil Science, Far Eastern Branch of the Russian Academy of Sciences, 159 Stoletija Str., Vladivostok, 690022, Russia. bulgakov@ibss.dvo.ru.
Yulia V VereshchaginaInstitute of Biology and Soil Science, Far Eastern Branch of the Russian Academy of Sciences, 159 Stoletija Str., Vladivostok, 690022, Russia.
Dmitry V BulgakovInstitute of Biology and Soil Science, Far Eastern Branch of the Russian Academy of Sciences, 159 Stoletija Str., Vladivostok, 690022, Russia.
Galina N VeremeichikInstitute of Biology and Soil Science, Far Eastern Branch of the Russian Academy of Sciences, 159 Stoletija Str., Vladivostok, 690022, Russia.
Yuri N ShkrylInstitute of Biology and Soil Science, Far Eastern Branch of the Russian Academy of Sciences, 159 Stoletija Str., Vladivostok, 690022, Russia.
Institute of Chemistry, Far Eastern Branch of the Russian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rolB plant oncogene of Agrobacterium rhizogenes perturbs many biochemical processes in transformed plant cells, thereby causing their neoplastic reprogramming. The oncogene renders the cells more tolerant to environmental stresses and herbicides and inhibits ROS elevation and programmed cell death. In the present work, we performed a proteomic analysis of Arabidopsis thaliana rolB-expressing callus line AtB-2, which represents a line with moderate expression of the oncogene. Our results show that under these conditions rolB greatly perturbs the expression of some chaperone-type proteins such as heat-shock proteins and cyclophilins. Heat-shock proteins of the DnaK subfamily were overexpressed in rolB-transformed calli, whereas the abundance of cyclophilins, members of the closely related single-domain cyclophilin family was decreased. Real-time PCR analysis of corresponding genes confirmed the reliability of proteomics data because gene expression correlated well with the expression of proteins. Bioinformatics analysis indicates that rolB can potentially affect several levels of signaling protein modules, including effector-triggered immunity (via the RPM1-RPS2 signaling module), the miRNA processing machinery, auxin and cytokinin signaling, the calcium signaling system and secondary metabolism.

Indexed as

Signal TransductionAgrobacteriumArabidopsisBacterial Proteinsbeta-GlucosidaseCells, CulturedGene Expression ProfilingPlant CellsPlant DiseasesPlant Growth RegulatorsPlant ProteinsProteomeReal-Time Polymerase Chain ReactionBacterial Proteinsbeta-GlucosidasePlant Growth RegulatorsPlant ProteinsProteomeRolB protein, Agrobacterium rhizogenes

Identifiers

PMID29396465
PMCPMC5797197
OpenAlexW2806354538

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.