Evidence map›Paper›PMID 29396288›Full record

ArticleCell chemical biology2018

Directed Evolution to Engineer Monobody for FRET Biosensor Assembly and Imaging at Live-Cell Surface.

Praopim Limsakul, Qin Peng, Yiqian Wu, Molly E Allen, Jing Liang, Albert G Remacle, Tyler Lopez, Xin Ge, Brian K Kay, Huimin Zhao and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  6. Article
  7. Article
  8. Molecules (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Review
  11. A Perspective of Epigenetic Regulation in Radiotherapy.Frontiers in cell and developmental biology · 2021
    Review
  12. Article
  13. Frontiers in physics · 2019
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Praopim LimsakulDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Qin PengDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Yiqian WuDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Molly E AllenDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093, USA.
Jing LiangDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Albert G RemacleSanford-Burnham-Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Tyler LopezDepartment of Chemical and Environmental Engineering, University of California, Riverside, Riverside, CA, USA.
Xin GeDepartment of Chemical and Environmental Engineering, University of California, Riverside, Riverside, CA, USA.
Brian K KayDepartment of Biological Sciences, University of Illinois Chicago, Chicago, IL 60607, USA.
Huimin ZhaoDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Alex Y StronginSanford-Burnham-Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Xiang-Lei YangDepartments of Chemical Physiology and Cell and Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Shaoying LuDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: kalu@eng.ucsd.edu.
Yingxiao WangDepartment of Bioengineering, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: yiw015@eng.ucsd.edu.
University of California San Diego · USSanford Burnham Prebys Medical Discovery Institute · USUniversity of California, Riverside · USUniversity of Illinois Urbana-Champaign · USScripps Research Institute · USUniversity of Illinois Chicago · US

Funding

Role of Spatiotemporal Epigenetic Dynamics in Regulating Endothelial Gene Expressions under FlowsR01HL121365 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHIEN, SHU, WANG, YINGXIAO · 2014 to 2025
$7.5M
Integrative Bioengineering of Heart, Vessels, and BloodT32HL105373 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, INTAGLIETTA, MARCOS · 2010 to 2019
$3.6M
Locus-specific Imaging of Dynamic Histone Methylations during ReprogrammingR01GM125379 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, WANG, YINGXIAO · 2017 to 2020
$2.4M
Elucidating pathological mechanism of DI-CMTCR01NS085092 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI YANG, XIANG-LEI · 2013 to 2017
$2.2M
FRET Imaging of Molecular Hierarchy at Subcellular Levels in MechanotransductionR01HL098472 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI WANG, YINGXIAO · 2010 to 2014
$1.9M
Structure-based design of camel-like human selective mAbs against MMPs in diseaseR01GM115672 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GE, XIN · 2016 to 2020
$1.5M
Multiplex FRET Imaging of Kinase-Epigenome Interregulations in Live Cancer CellsR33CA204704 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, YINGXIAO · 2017 to 2019
$1.1M
The Integration of FLIM and FRET for the Visualization of Flow-induced MolecularK02HL109142 · NHLBI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI WANG, YINGXIAO · 2011 to 2015
$549k
Engineering Machinery Molecules to Visualize and Actuate ImmunotherapyR21CA209629 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WANG, YINGXIAO · 2017 to 2018
$371k
NCI NIH HHS R21 CA209629NCI NIH HHS R33 CA204704NHLBI NIH HHS K02 HL109142NHLBI NIH HHS R01 HL098472NHLBI NIH HHS R01 HL121365NHLBI NIH HHS T32 HL105373NIGMS NIH HHS R01 GM115672NIGMS NIH HHS R01 GM125379NINDS NIH HHS R01 NS085092
6 · The paper itself

Abstract

Monitoring enzymatic activities at the cell surface is challenging due to the poor efficiency of transport and membrane integration of fluorescence resonance energy transfer (FRET)-based biosensors. Therefore, we developed a hybrid biosensor with separate donor and acceptor that assemble in situ. The directed evolution and sequence-function analysis technologies were integrated to engineer a monobody variant (PEbody) that binds to R-phycoerythrin (R-PE) dye. PEbody was used for visualizing the dynamic formation/separation of intercellular junctions. We further fused PEbody with the enhanced CFP and an enzyme-specific peptide at the extracellular surface to create a hybrid FRET biosensor upon R-PE capture for monitoring membrane-type-1 matrix metalloproteinase (MT1-MMP) activities. This biosensor revealed asymmetric distribution of MT1-MMP activities, which were high and low at loose and stable cell-cell contacts, respectively. Therefore, directed evolution and rational design are promising tools to engineer molecular binders and hybrid FRET biosensors for monitoring molecular regulations at the surface of living cells.

Indexed as

AntibodiesBiosensing TechniquesColoring AgentsDirected Molecular EvolutionFluorescence Resonance Energy TransferHEK293 CellsHeLa CellsHumansMatrix Metalloproteinase 14Models, MolecularOptical ImagingPeptidesPhycoerythrinRecombinant Fusion ProteinsAntibodiesColoring AgentsMatrix Metalloproteinase 14PeptidesPhycoerythrinRecombinant Fusion Proteinscell-cell contactsdirected evolutionFRET biosensormonobodyMT1-MMPR-phycoerythrin

Identifiers

PMID29396288
PMCPMC5910193
OpenAlexW2786565844

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.