Evidence map›Paper›PMID 29395047›Full record

ArticleBiophysical journal2018

Structural Conservation and Effects of Alterations in T Cell Receptor Transmembrane Interfaces.

Soohyung Park, Logesvaran Krshnan, Melissa J Call, Matthew E Call, Wonpil Im

Open access · bronzeAbstract readLetter
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. T cell and B cell antigen receptors share a conserved core transmembrane structure.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Review
  5. T Cell Reprogramming Against Cancer.Methods in molecular biology (Clifton, N.J.) · 2020
    Review
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Soohyung ParkDepartments of Biological Sciences and Bioengineering, Lehigh University, Bethlehem, Pennsylvania.
Logesvaran KrshnanStructural Biology Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia; Department of Medical Biology, University of Melbourne, Parkville, Victoria, Australia.
Melissa J CallStructural Biology Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia; Department of Medical Biology, University of Melbourne, Parkville, Victoria, Australia.
Matthew E CallStructural Biology Division, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia; Department of Medical Biology, University of Melbourne, Parkville, Victoria, Australia. Electronic address: mecall@wehi.edu.au.
Wonpil ImDepartments of Biological Sciences and Bioengineering, Lehigh University, Bethlehem, Pennsylvania. Electronic address: wonpil@lehigh.edu.
University of Melbourne · AULehigh University · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI BOWIE, JAMES U · 2010 to 2017
$31.9M
Mechanisms & Energetics of Transmembrane-induced Signaling of Cytokine ReceptorsR01GM092950 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI IM, WONPIL · 2010 to 2014
$1.4M
NIGMS NIH HHS R01 GM092950NIGMS NIH HHS U54 GM087519
6 · The paper itself

Abstract

T cell receptors (TCRs) are octameric assemblies of type-I membrane proteins in which a receptor heterodimer (αβ, δγ, or pre-Tαβ) is associated with three dimeric signaling modules (CD3δε, CD3γε, and ζζ) at the T cell or pre-T cell surface. In the human αβTCR, the α and β transmembrane (TM) domains form a specific structure that acts as a hub for assembly with the signaling modules inside the lipid bilayer. Conservation of key polar contacts across the C-terminal half of this TM interface suggests that the structure is a common feature of all TCR types. In this study, using molecular dynamics simulations in explicit lipid bilayers, we show that human δγ and pre-Tαβ TM domains also adopt stable αβ-like interfaces, yet each displays unique features that modulate the stability of the interaction and are related to sequences that are conserved within TCR types, but are distinct from the αβ sequences. We also performed simulations probing effects of previously reported mutations in the human αβ TM interface, and observed that the most disruptive mutations caused substantial departures from the wild-type TM structure and increased dynamics. These simulations show a strong correlation between structural instability, increased conformational variation, and the severity of structural defects in whole-TCR complexes measured in our previous biochemical assays. These results thus support the view that the stability of the core TM structure is a key determinant of TCR structural integrity and suggest that the interface has been evolutionarily optimized for different forms of TCRs.

Indexed as

Amino Acid SequenceCell MembraneHumansHydrogen BondingMolecular Dynamics SimulationProtein MultimerizationProtein Structure, QuaternaryReceptors, Antigen, T-CellReceptors, Antigen, T-Cell

Identifiers

PMID29395047
PMCPMC5883570
OpenAlexW2786559255

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.