Evidence map›Paper›PMID 29394293›Full record

ArticlePloS one2018

Crystal structure and enzymatic properties of chalcone isomerase from the Antarctic vascular plant Deschampsia antarctica Desv.

Sun-Ha Park, Chang Woo Lee, Sung Mi Cho, Hyoungseok Lee, Hyun Park, Jungeun Lee, Jun Hyuck Lee

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sun-Ha ParkUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Chang Woo LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Sung Mi ChoUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Hyoungseok LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Hyun ParkUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Jungeun LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.
Jun Hyuck LeeUnit of Polar Genomics, Korea Polar Research Institute, Incheon, Republic of Korea.ORCID 0000-0002-4831-2228
Korea Polar Research Institute · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chalcone isomerase (CHI) is an important enzyme for flavonoid biosynthesis that catalyzes the intramolecular cyclization of chalcones into (S)-flavanones. CHIs have been classified into two types based on their substrate specificity. Type I CHIs use naringenin chalcone as a substrate and are found in most of plants besides legumes, whereas type II CHIs in leguminous plants can also utilize isoliquiritigenin. In this study, we found that the CHI from the Antarctic plant Deschampsia antarctica (DaCHI1) is of type I based on sequence homology but can use type II CHI substrates. To clarify the enzymatic mechanism of DaCHI1 at the molecular level, the crystal structures of unliganded DaCHI1 and isoliquiritigenin-bound DaCHI1 were determined at 2.7 and 2.1 Å resolutions, respectively. The structures revealed that isoliquiritigenin binds to the active site of DaCHI1 and induces conformational changes. Additionally, the activity assay showed that while DaCHI1 exhibits substrate preference for naringenin chalcone, it can also utilize isoliquiritigenin although the catalytic activity was relatively low. Based on these results, we propose that DaCHI1 uses various substrates to produce antioxidant flavonoids as an adaptation to oxidative stresses associated with harsh environmental conditions.

Indexed as

Amino Acid SequenceAntarctic RegionsCrystallography, X-RayHydrogen-Ion ConcentrationIntramolecular LyasesKineticsPoaceaeProtein ConformationSequence Homology, Amino AcidTemperaturechalcone isomeraseIntramolecular Lyases

Identifiers

PMID29394293
PMCPMC5796730
OpenAlexW2786417414

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.