Evidence map›Paper›PMID 29394270›Full record

ArticlePloS one2018

Establishment of an Arabidopsis callus system to study the interrelations of biosynthesis, degradation and accumulation of carotenoids.

Patrick Schaub, Marta Rodriguez-Franco, Christopher Ian Cazzonelli, Daniel Álvarez, Florian Wüst, Ralf Welsch

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
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  10. Carotenoid Extraction from Plant Tissues.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  11. Desiccation tolerance in the resurrection plantFrontiers in plant science · 2024
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  12. Metabolite Profiling of Paraquat TolerantAntioxidants (Basel, Switzerland) · 2022
    Article
  13. Subfunctionalization of D27 Isomerase Genes in Saffron.International journal of molecular sciences · 2022
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  16. Review
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  19. Overexpression ofFrontiers in plant science · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Patrick SchaubUniversity of Freiburg, Faculty of Biology, Institute for Biology II, Freiburg, Germany.
Marta Rodriguez-FrancoUniversity of Freiburg, Faculty of Biology, Institute for Biology II, Freiburg, Germany.
Christopher Ian CazzonelliHawkesbury Institute for the Environment, University of Western Sydney, Hawkesbury Campus, Richmond, NSW Australia.
Daniel ÁlvarezUniversity of Freiburg, Faculty of Biology, Institute for Biology II, Freiburg, Germany.
Florian WüstUniversity of Freiburg, Faculty of Biology, Institute for Biology II, Freiburg, Germany.
Ralf WelschUniversity of Freiburg, Faculty of Biology, Institute for Biology II, Freiburg, Germany.ORCID 0000-0002-2865-2743
University of Freiburg · DEWestern Sydney University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The net amounts of carotenoids accumulating in plant tissues are determined by the rates of biosynthesis and degradation. While biosynthesis is rate-limited by the activity of PHYTOENE SYNTHASE (PSY), carotenoid losses are caused by catabolic enzymatic and non-enzymatic degradation. We established a system based on non-green Arabidopsis callus which allowed investigating major determinants for high steady-state levels of β-carotene. Wild-type callus development was characterized by strong carotenoid degradation which was only marginally caused by the activity of carotenoid cleavage oxygenases. In contrast, carotenoid degradation occurred mostly non-enzymatically and selectively affected carotenoids in a molecule-dependent manner. Using carotenogenic pathway mutants, we found that linear carotenes such as phytoene, phytofluene and pro-lycopene resisted degradation and accumulated while β-carotene was highly susceptible towards degradation. Moderately increased pathway activity through PSY overexpression was compensated by degradation revealing no net increase in β-carotene. However, higher pathway activities outcompeted carotenoid degradation and efficiently increased steady-state β-carotene amounts to up to 500 μg g-1 dry mass. Furthermore, we identified oxidative β-carotene degradation products which correlated with pathway activities, yielding β-apocarotenals of different chain length and various apocarotene-dialdehydes. The latter included methylglyoxal and glyoxal as putative oxidative end products suggesting a potential recovery of carotenoid-derived carbon for primary metabolic pathways. Moreover, we investigated the site of β-carotene sequestration by co-localization experiments which revealed that β-carotene accumulated as intra-plastid crystals which was confirmed by electron microscopy with carotenoid-accumulating roots. The results are discussed in the context of using the non-green calli carotenoid assay system for approaches targeting high steady-state β-carotene levels prior to their application in crops.

Indexed as

Arabidopsisbeta CaroteneCarotenoidsKineticsOxidation-ReductionSubcellular Fractions(all-E) phytoenebeta CaroteneCarotenoids

Identifiers

PMID29394270
PMCPMC5796706
OpenAlexW2789100434

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.