Evidence map›Paper›PMID 29392476›Full record

ArticlePhotosynthesis research2018

UMP kinase activity is involved in proper chloroplast development in rice.

Fei Chen, Guojun Dong, Xiaohui Ma, Fang Wang, Yanli Zhang, Erhui Xiong, Jiahuan Wu, Huizhong Wang, Qian Qian, Limin Wu and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Photosynthesis research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

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  13. Genetic mapping of green curd gene Gr in cauliflower.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  14. Nucleotide Metabolism in Plants.Plant physiology · 2020
    Article
  15. UMP Kinase Regulates Chloroplast Development and Cold Response in Rice.International journal of molecular sciences · 2019
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Fei ChenCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China.
Guojun DongState Key Laboratory for Rice Biology, China National Rice Research Institute, Zhejiang, China.
Xiaohui MaCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China.
Fang WangInstitute of Insect Sciences, Zhejiang University, Zhejiang, China.
Yanli ZhangCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China.
Erhui XiongCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China.
Jiahuan WuCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China.
Huizhong WangCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China.
Qian QianState Key Laboratory for Rice Biology, China National Rice Research Institute, Zhejiang, China.
Limin WuCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China. lmwu2006@aliyun.com.
Yanchun YuCollege of Life and Environmental Sciences, Hangzhou Normal University, Zhejiang, China. ycyu@hznu.edu.cn.
Hangzhou Normal University · CNChina National Rice Research Institute · CNZhejiang University · CN

Funding

Hangzhou Overseas Students Merit Funded Projects 20140005National Key Research and Development Program of China 2016YFD0101801National Natural Science Foundation of China 31170346National Natural Science Foundation of China 31271696National Natural Science Foundation of China 31501282National Natural Science Foundation of China 91335103Outstanding Researcher Program of Hangzhou Normal University 20141215Startup Fund of Hangzhou Normal University 20110004
6 · The paper itself

Abstract

Isolation of leaf-color mutants is important in understanding the mechanisms of chloroplast biogenesis and development. In this study, we identified and characterized a rice (Oryza sativa) mutant, yellow leaf 2 (yl2), exhibiting pale yellow leaves with a few longitudinal white stripes at the early seedling stage then gradually turning yellow. Genetic analyses revealed that YL2 encodes a thylakoid membrane-localized protein with significant sequence similarity to UMP kinase proteins in prokaryotes and eukaryotes. Prokaryotic UMP kinase activity was subsequently confirmed, with YL2 deficiency causing a significant reduction in chlorophyll accumulation and photochemical efficiency. Moreover, YL2 is also light dependent and preferentially expressed in green tissues. Chloroplast development was abnormal in the yl2 mutant, possibly due to reduced accumulation of thylakoid membranes and a lack of normal stroma lamellae. 2D Blue-Native SDS-PAGE and immunoblot analyses revealed a reduction in several subunits of photosynthetic complexes, in particular, the AtpB subunit of ATP synthase, while mRNA levels of corresponding genes were unchanged or increased compared with the wild type. In addition, we observed a significant decrease (ca. 36.3%) in cpATPase activity in the yl2 mutant compared with the wild type. Taken together, our results suggest that UMP kinase activity plays an essential role in chloroplast development and regulating cpATPase biogenesis in rice.

Indexed as

Chloroplast Proton-Translocating ATPasesChloroplastsCloning, MolecularGene Expression Regulation, PlantMutationNucleoside-Phosphate KinaseOryzaPlant ProteinsThylakoidsChloroplast Proton-Translocating ATPasesNucleoside-Phosphate KinasePlant Proteinsuridine monophosphate kinaseChloroplast developmentPhotosynthetic complexesRice (Oryza sativa L.)Thylakoid biogenesisUMP kinaseYellow leaf mutant

Identifiers

PMID29392476
PMCPMC5999181
OpenAlexW2793718559

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.