Evidence map›Paper›PMID 29392408›Full record

ArticleMolecular genetics and genomics : MGG2018

Genome-wide DNA methylation analysis in jejunum of Sus scrofa with intrauterine growth restriction.

Yue Hu, Liang Hu, Desheng Gong, Hanlin Lu, Yue Xuan, Ru Wang, De Wu, Daiwen Chen, Keying Zhang, Fei Gao and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. How Epigenetics Can Enhance Pig Welfare?Animals : an open access journal from MDPI · 2021
    Review
  5. Article
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Yue HuGenome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Liang HuInstitute of Animal Nutrition, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
Desheng GongGenome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Hanlin LuGenome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China.
Yue XuanInstitute of Animal Nutrition, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
Ru WangInstitute of Animal Nutrition, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
De WuInstitute of Animal Nutrition, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
Daiwen ChenInstitute of Animal Nutrition, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
Keying ZhangInstitute of Animal Nutrition, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China.
Fei GaoGenome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China. flys828@gmail.com.
Lianqiang CheInstitute of Animal Nutrition, Sichuan Agricultural University, Ya'an, 625014, Sichuan, China. clianqiang@hotmail.com.
Sichuan Agricultural University · CNAgricultural Genomics Institute at Shenzhen · CN

Funding

Sichuan strategic project on the development of new products 2015GZX0011The Key Scientific and Technological Transformation and Demonstration Project of Sichuan Province 2016CC0070
6 · The paper itself

Abstract

Intrauterine growth restriction (IUGR) may elicit a series of postnatal body developmental and metabolic diseases due to their impaired growth and development in the mammalian embryo/fetus during pregnancy. In the present study, we hypothesized that IUGR may lead to abnormally regulated DNA methylation in the intestine, causing intestinal dysfunctions. We applied reduced representation bisulfite sequencing (RRBS) technology to study the jejunum tissues from four newborn IUGR piglets and their normal body weight (NBW) littermates. The results revealed extensively regional DNA methylation changes between IUGR/NBW pairs from different gilts, affecting dozens of genes. Hiseq-based bisulfite sequencing PCR (Hiseq-BSP) was used for validations of 19 genes with epigenetic abnormality, confirming three genes (AIFM1, MTMR1, and TWIST2) in extra samples. Furthermore, integrated analysis of these 19 genes with proteome data indicated that there were three main genes (BCAP31, IRAK1, and AIFM1) interacting with important immunity- or metabolism-related proteins, which could explain the potential intestinal dysfunctions of IUGR piglets. We conclude that IUGR can lead to disparate DNA methylation in the intestine and these changes may affect several important biological processes such as cell apoptosis, cell differentiation, and immunity, which provides more clues linking IUGR and its long-term complications.

Indexed as

DNA MethylationAnimalsFemaleFetal Growth RetardationJejunumPregnancySus scrofaEpigeneticsFetal growthIntestinal functionIntrauterine growth restriction (IUGR)

Identifiers

PMID29392408
PMCPMC6061055
OpenAlexW2794214299

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.